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3 protocols using xylacin

1

Primary Neuron Culture and Analysis

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For the described experiments the following materials and chemicals were used: Minimal essential medium (MEM), glutamine, Hanks' Balanced Salt Solution (HBSS), normal horse serum (NHS; Gibco BRL Life Technologies, Eggenstein, Germany), glucose (Braun, Melsungen, Germany), cell-culture inserts with a pore size of 0.4 µm (Millipore, Schwalbach/Ts., Germany), vibratome (Vibratom VT 1200 S; Leica Microsystems AG, Wetzlar, Germany), six-well culture dishes (Falcon, BD Biosciences Discovery Labware, Bedford, MA, USA), streptomycin, penicillin, ascorbic acid, N-methyl-D-aspartate (NMDA; Sigma-Aldrich, Deisenhofen, Germany), insulin (Boehringer, Mannheim, Germany), ketamine hydrochloride (Merial, Hallbergmoos, Germany), xylacin (Bayer, Leverkusen, Germany, atropine (Ratiopharm, Ulm, Germany), bicinchoninic acid (BCA) test, Tris (Roth, Karlsruhe, Germany), Glycerol (Sigma-Aldrich), β-mercaptoethanol (Sigma-Aldrich, Steinheim, Germany), bromophenol blue (AppliChem, Darmstadt, Germany), chemiluminescence, superfrost microscope slides from (Thermo Fisher Scientific, Rockford, IL, USA), cryostat 3050 S (Leica), coated slides (Menzel, Braunschweig, Germany), X-ray films (Kodak, Stuttgart, Germany), Dako fluorescent mounting medium (Dako, Hamburg, Germany), Entellan (Merck, Darmstadt, Germany)
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2

Corneal Transplant Study in Rats

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Inbred female Fisher (Rt1lv1) and Lewis (Rt1l) rats (Charles River, Sulzfeld, Germany) were used as the donors and recipients, respectively. All animals were treated in accordance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research. The study was approved by the IACUC of Freiburg University, Faculty of Medicine and the Regierungspraesidium Freiburg. The rats were anesthetized with a short inhalation of isofluran followed by an intraperitoneal injection of a mixture of ketamine (Essex, München, Germany), xylacin (Bayer, Leverkusen, Germany), and atropine (Braun, Melsungen, Germany). Animal euthanasia was done by CO2 inhalation. All groups and treatments are shown in Table 1.
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3

Epigenetic Profiling of Poly I:C-Exposed Mice

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At an age of thirteen weeks, brains from 8 male and 9 female mice prenatally exposed to Poly I:C, and 9 male and 9 female offspring from PBS-treated dams were used for epigenetic analysis. For this purpose, mice were anesthetized with a single intraperitoneal injection of Ketamin (Pfizer, Germany) and Xylacin (Bayer, Germany). 0.7 ml 10 % Ketamin and 0.3 ml 2 % Xylacin were mixed and administered at a dose of 10 ml/kg. Afterwards, brains were collected and stored at −20 °C in RNA-Later (Invitrogen, Germany). Half of the brain was used to extract nuclear proteins using a Nuclear Extract Kit (Active Motif, Belgium) and the activities of various HDAC and DNMT enzymes were analyzed with the HDAC Fluorescent Assay Kit and DNMT Activity/Inhibition Assay (Active Motif, Belgium). The fluorescence/optical density was detected with a PolarStar OPTIMA microplate fluorimeter (BMG Labtech).
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