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Bsa standard

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BSA standards are reference materials used for the calibration and verification of protein quantification assays. They are made from highly purified bovine serum albumin and are provided at known concentrations to enable the creation of standard curves for the determination of protein levels in samples.

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9 protocols using bsa standard

1

Size-Exclusion Chromatography of Proteins

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2–2.5 mg ml−1 of DeoC or E-fts were loaded into a 100 μl loop on a Superdex 200 Increase 10/300 GL column (GE, cat. 28-990944) using the following configuration: ÄKTA Pure 25 M, multiple-angle light scattering (MALS) by Wyatt Technology model: DAWN HELEOS II and Optilab TrEX. Mass calibration was done by using 2 mg ml−1 BSA standard (Bio-Rad, cat. 5000206). PBS pH 7.4 was used as isocratic buffer. Buffer and samples were filtered through 0.1 μm filter system.
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2

Circadian Rhythm Regulation in Cyanobacteria

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KaiA, KaiB, KaiC were prepared according to standard protocols43 (link), but the anion exchange chromatography step was omitted in the KaiC purification protocol. Fluorescently labeled KaiB (KaiB-IAF) was prepared by an overnight labeling reaction of KaiB-K25C with 6-iodoacetofluorescein43 (link). Protein concentrations were measured via densitometry on an SDS-PAGE gel against a BSA standard (Biorad). KaiABC reactions at different concentration were prepared by serial dilution of a master mix prepared at 2× standard concentration (7 μM KaiB and KaiC, 3 μM KaiA, 0.4 μM KaiB-IAF) in standard reaction buffer containing 2.5 mM ATP (20 mM Tris [pH 8], 150 mM NaCl, 5 mM MgCl2, 10% glycerol, 0.5 mM EDTA, 2.5 mM ATP). To monitor oscillations, reactions were transferred to a black 384-well plate (25 μL/well) and placed into a Tecan F500 plate reader pre-warmed to 30 °C43 (link). Parallel and perpendicular fluorescence signals (exc. 485 nm, 20 nm bandpass; emm. 535 nm, 25 nm bandpass; dichroic 510 nm.) were read out every 15 min. Wells containing buffer only were used as blanks. The G factor was adjusted to give 20 mP in the wells containing a solution of free fluorescein.
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3

Immunoblotting Protocol for Protein Analysis

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For immunoblotting, cells were lysed in RIPA buffer (Sigma) after two PBS wash and cell lysate was sonicated for 5 min. Supernatant was collected after centrifugation at 4°C for 10 min (10 000 g). Protein concentration was determined using the Pierce BCA protein assay kit from ThermoFisher Scientific and BSA standards from BioRad. Proteins were then separated in 4–12% NuPAGE Bis–Tris precast gels (ThermoFisher Scientific) and transferred on nitrocellulose membrane using the iBlot2 dry transfer system from ThermoFisher Scientific. Membranes were incubated overnight at +4°C with primary antibodies (anti-ZRANB2: 24816-1-AP, Proteintech; anti-SYF2: 16958-1-AP, Proteintech; anti-GAPDH from Sigma; anti-GFP from Roche) and proteins were detected using horse-radish peroxidase-conjugated goat anti-mouse or anti-rabbit antibodies. After washing, the blots were revealed using Clarity Werstern ECL substrate (BioRad), and a ChemiDoc gel imaging system from BioRad.
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4

Glycoprotein Isolation and Purification

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The resuspended Euglena cells from the culturing (1 ml) were diluted with 5x binding/wash buffer (0.25 ml) containing phenylmethylsulfonyl fluoride (2 mM) and lysed by sonication (3 × 10 s, 25% amplitude, 30 s off between each pulse) and centrifuged (5 min, 1000 × g). Not all cells were lysed. Total lysate containing the equivalent of 1.1 mg of protein (Easy Bradford BioRad, BSA standards) was then used for glycoprotein purification using both ConA and wheat germ agglutinin (WGA) Glycoprotein Isolation Kits (Thermo Scientific) according to the manufacturer’s instructions. Protein quality was assessed using silver-stained SDS-PAGE (Bolt 4%–12% Bis-TRIS plus, Invitrogen) using SeeBlue Plus2 Prestained Protein Standard (Thermo Fisher Scientific) as the standard.
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5

Protein Extraction and Western Blot Analysis

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The cells were lysed in buffer containing 20 mM Tris, pH 7.4, 2 mM EGTA, 2 mM Na2VO3, 2 mM Na4P2O7, 2% SDS, 2% Triton X-100, 1 μM leupeptin, 1 μM aprotinin, and 1 mM PMSF. We used a protein assay kit by BSA standards to determine the protein concentration according to the manufacturer’s instructions (Bio-Rad Laboratories, Hercules, CA, USA). The amounts of cell lysate were distributed equally via SDS polyacrylamide gel electrophoresis (PAGE) and transferred to a nitrocellulose membrane (Hybond-C, Amersham Pharmacia Biotech Inc., Oakville, ON, USA). After blocking with Tris-buffered saline (TBS) containing 5% nonfat dry milk for 1 h, we incubated the membranes at 4 °C overnight, with anti-GnRH-I receptor (Neomarker, Fremont, CA, USA), polyclonal total EGFR antibody (Cell Signaling Technology, Danvers, MA, USA), and anti-N-cadherin (Millipore, Darmstadt, Germany) or anti-Twist (Thermal, MA, USA) antibody, followed by incubating them with HRP-conjugated secondary antibody. We read the immunoreactive bands with an enhanced chemiluminescence (ECL) kit. The membrane was stripped by stripping buffer (62.5 mM Tris, 10 mM DTT, and 2% SDS, pH 6.7) at 50 °C for 30 min and re-probed with anti-β-actin antibody (Santa Cruz, Dallas, TX, USA) as a loading control.
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6

Protein Extraction and Western Blot Analysis

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Liver or intestinal tissues were lysed using M-PER mammalian protein extraction reagent supplemented with HALT proteinase and phosphatase inhibitor cocktails (Thermo-fisher Scientific, USA), Protein concentrations were determined by Bradford protein assay with BSA standards (Bio-Rad). Total protein was extracted and equal quantities of proteins (10 µg) were electrophoresed on 10% SDS-PAGE, and then transferred onto PVDF membranes (Sangon Biotech, China). The membrane was incubated with primary antibodies and then with horseradish peroxidase (HRP)-conjugated secondary antibody. ECL Detection System (CliNX, Shanghai, China) was used to detect antibody reactivity. Primary antibodies included rabbit monoclonal antibody β-actin (Abcam, USA) and rabbit polyclonal antibody Lcn2 (Abcam, USA), which were all diluted at 1:1000. Appropriate second antibodies (Cell Signaling Technology, USA) were all diluted at 1:2000.
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7

Quantification of Key Protein Targets in Cell Lysates

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The cells were lysed in buffer containing 20 mM Tris, pH 7.4; 2 mM EGTA; 2 mM Na2VO3; 2 mM Na4P2O7; 2% Triton X-100; 2% SDS; 1 μM aprotinin; 1 μM leupeptin and 1 mM PMSF. The protein concentration was determined with a protein assay kit using BSA standards according to the manufacturer's instructions (Bio-Rad Laboratories, Hercules, CA). Equal amounts of cell lysate were separated by SDS polyacrylamide gel electrophoresis (PAGE) and transferred to a nitrocellulose membrane (Hybond-C, Amersham Pharmacia Biotech Inc., Oakville, ON). Following blocking with Tris-buffered saline (TBS) containing 5% non-fat dry milk for 1 h, the membranes were incubated overnight at 4°C with anti-GHRH-R (Abcam, Cambridge, MA), anti-Twist (Thermal), or anti-N-cadherin (Millipore) antibody, followed by incubation with a HRP-conjugated secondary antibody. The immunoreactive bands were detected with an enhanced chemiluminescence (ECL) kit. The membrane was then stripped with stripping buffer (62.5 mM Tris, 10 mM DTT, and 2% SDS, pH 6.7) at 50°C for 30 min and re-probed with an anti-GAPDH antibody (Santa Cruz) as a loading control.
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8

Western Blot Protocol for Cell Lysates

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For isolation of total lysates, cells were pelleted after 1× PBS wash and lysed in RIPA lysis buffer (Thermo #89900) supplied with protease inhibitor cocktail (Sigma #11836170001). Lysates were collected in new pre‐chilled tubes and protein concentration was measured using Bradford reagent (Bio‐Rad #500‐025) and BSA standards (Bio‐Rad #500‐027). Equal amount of protein was mixed with 4× gel loading dye (Thermo #NP007) and analyzed by pre‐casted gel (Thermo #NP0036) and Western blotting. Final western blots were detected on a GE Healthcare Life Sciences, Amersham Imager 600, followed by analyzing band intensities with ImageJ (U.S. National Institutes of Health, Bethesda, MD, USA).
Antibodies used for western blotting were as follows: anti‐LRP6 (#S2560) primary antibody was purchased from Cell Signaling Technology, antibody against anti‐GAPDH (#GTX627408) was from GeneTex, anti‐Vinculin (#sc‐736914) primary antibody was from Santa Cruz, antibody against β‐catenin (#610153) was from BD Biosciences, anti‐MCL‐1 (#ab32087), anti‐BCL‐2 (#ab692) primary antibodies were from Abcam.
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9

Western Blot Analysis of ES and SHT-dh Cells

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Whole cell extracts from ES Cells and SHTdh striatal cells were isolated using RIPA buffer that contained Complete Protease Inhibitor Cocktail (Roche, Basel, Switzerland). Protein concentrations were measured using Bio-Rad Protein Assay against BSA standards (Bio-Rad, Hercules, CA). Protein from each sample was resolved by SDS-PAGE. Primary antibodies used: Sp1 (Custom-made, 1:1000) and beta-tubulin (ab6046, Abcam). HRP conjugated secondary antibodies (Pierce, ThermoFisher Scientific, Waltham, MA) were used at a dilution of 1:5000. Western Lightning Plus–ECL (PerkinElmer, Waltham, MA) was used for chemiluminescent detection.
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