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Aida image analyzer 4

Manufactured by Elysia raytest
Sourced in Germany

The AIDA image analyzer 4.26 software is a tool designed for the analysis and processing of digital images. It provides core functionality for tasks such as image segmentation, object detection, and measurement. The software is capable of handling a variety of image formats and can be used for a range of applications. However, a detailed description of its intended use or interpretation of its capabilities is not available within the scope of this request.

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8 protocols using aida image analyzer 4

1

Western Blot Analysis of RAGE and XBP-1

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Right brain hemispheres were homogenized in Tris HCl buffer supplemented with proteinase inhibitor cocktail (Roche complete mini) by using the Tissue Lyzer (Qiagen, Hilden, Germany). Proteins (40 µg per lane, determined by Roti Nanoquant reagent) were separated on 10% SDS PAA gel and blotted onto nitrocellulose. Non-specific binding was blocked with 0.2% I-Block (Thermo Fisher Scientific, Waltham, MA, USA) solution including 0.05% Tween20. Primary antibodies were as follows: anti-RAGE (1:1000, Santa Cruz Biotechnology, Dallas, TX, USA) and XBP-1 (1:1000, Abcam, Cambridge, UK). As a loading control, GAPDH was detected (14C10, Cell Signaling, Danvers, MA, USA). Blots were incubated with respective secondary antibody coupled with horseradish peroxidase (Thermo Scientific, Karlsruhe, Germany) and signals obtained by administration of SuperSignal West Femto chemiluminescent substrate (Thermo Scientific, Karlsruhe, Germany). Chemiluminescence signals were captured using a CCD-camera imaging system (Raytest, Straubenhardt, Germany) and densitometric analysis performed by using AIDA image analyzer 4.26 software (Raytest, Straubenhardt, Germany).
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2

Quantitative Western Blot Analysis

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Cells were lysed in LDS sample buffer (Invitrogen, Germany) including 100 mM dithiothreitol (Roth, Germany) and protease inhibitor mix (Roche, Germany). 20 µg proteins of whole cell lysate were separated on 10% SDS-acrylamide gels and transferred to a nitrocellulose membrane. Blots were either blocked with 5% BSA or milk powder and incubated with primary antibodies diluted in respective blocking buffer as follows: anti-APP (previously described: [35] (link)), anti-ADAM10 (Merck, Germany), anti-GSK3-beta (Bioss, Germany), anti-Pgp (Santa Cruz, Germany) anti-actin (Sigma, Germany), anti-P-ERK and anti-GAPDH (both: Cell Signaling, USA). Detection of APPs-alpha was performed as a dot blot with direct application of cell culture supernatant to the nitrocellulose membrane and 6E10 (Covance, Germany) as primary antibody. Blots were incubated with respective HRP-labeled secondary anti-mouse or anti-rabbit antibodies (Thermo Scientific, Germany) and GAPDH or actin were used as loading controls. Signals were detected with a CCD-camera imaging system and quantitatively analyzed with AIDA image analyzer 4.26 software (Raytest, Germany).
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3

Quantitative Analysis of Blot and IHC Signals

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Quantitative analysis of Western blot chemiluminescent signals or chromogenic signals from IHC sections was carried out with AIDA image analyzer 4.26 software (Raytest, Straubenhardt, Germany). Microscopic pictures of the IHCs were acquired by an EVOS XL microscope (Life Technologies, Darmstadt, Germany). Scale bars were inserted by using ImageJ software60 (link).
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4

Quantitative Analysis of APP Expression

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IHC sections were stained with anti-APP antibody 6E10 (Covance) as described previously [28 (link)]. For the densitometric analysis, two sections per mouse were used (total magnification of 40×). Five areas were determined to be measured. All areas were corrected for the value of the background area. For cortical tissue, two distinct areas were analyzed and mean value of both measures was used. Experimenters were blinded for the treatment of the mice during the analysis. Microscopic pictures of the IHCs were acquired by an EVOS XL microscope (Life Technologies, Darmstadt, Germany). AIDA image analyzer 4.26 software (Raytest, Straubenhardt, Germany) was used for quantitative analysis.
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5

Quantitative Western Blot Analysis

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Protein content of samples was assessed using the Nanoquant reagent (Roth, Karlsruhe, Germany). 7 μg of protein were separated on a 10% SDS acrylamide/bisacrylamide gel and transferred to a nitrocellulose membrane. Antibodies used were: anti-ApoA1 (Thermo Fisher Scientific, Karlsruhe, Germany), anti-human serum albumin (Abcam, Cambridge, UK), and appropriate secondary HRP-labelled antibodies (Thermo Fisher, Karlsruhe, Germany). Recombinant ApoA1 (Chemicon International, Temecula, CA, USA) was used for specificity control of the respective antibody (not shown). Development of the signals was conducted using the SuperSignal West Femto chemiluminescent substrate (Thermo Scientific, Karlsruhe, Germany) and a CCD-camera imaging system (Raytest, Straubenhardt, Germany). Quantitative analysis was carried out using the AIDA image analyzer 4.26 software (Raytest, Straubenhardt, Germany).
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6

Quantifying ABCA1 Expression in THP-1 Macrophages

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THP‐1 macrophages (0.8 × 106/well) were seeded in 6‐well plates and first treated with the indicated concentrations of piperine and pioglitazone for 24 h in FBS‐free RPMI‐1640 medium supplemented with 0.1% BSA and 10 μg/mL unesterified cholesterol. After incubation, cells were lysed with NP40 buffer (150 mM NaCl; 50 mM HEPES (pH 7.4); 1% NP40; 1% protease inhibitor Complete (Roche); 1% PMSF; 0.5% Na3VO4; 0.5% NaF) for 30 min at 4°C. The lysed cells were collected and centrifuged at 16 060 g for 20 min to collect the supernatant. Protein concentration was assessed with Bradford assay using Roti®‐Quant from Carl Roth (#K015.1, Karlsruhe, Germany). Total protein (20 μg per sample) was loaded and separated via SDS‐PAGE. Expression levels of specific proteins were analyzed using antibodies against the indicated proteins and visualized with ECL reagent and a LAS‐3000 luminescent image analyzer (Fujifilm) with AIDA image analyzer 4.06 software (Raytest). A representative whole‐blot picture resulting from the detection of ABCA1 in the presence and absence of piperine is presented in the Supporting Information Fig. 1.
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7

Protein Expression Analysis of THP-1 Macrophages

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THP-1 macrophages (0.8 × 106/well) were seeded in 6-well plates and first treated with the indicated concentrations of piperine and pioglitazone for 24 h in FBS-free RPMI-1640 medium supplemented with 0.1% BSA and 10 μg/mL un-esterified cholesterol. After incubation, cells were lysed with NP40 buffer (150 mM NaCl; 50 mM HEPES (pH 7.4); 1% NP40; 1% protease inhibitor Complete (Roche); 1% PMSF; 0.5% Na3VO4; 0.5% NaF) for 30 min at 4°C. The lysed cells were collected and centrifuged at 16 060 g for 20 min to collect the supernatant. Protein concentration was assessed with Bradford assay using Roti® -Quant from Carl Roth (#K015.1, Karlsruhe, Germany). Total protein (20 μg per sample) was loaded and separated via SDS-PAGE. Expression levels of specific proteins were analyzed using antibodies against the indicated proteins and visualized with ECL reagent and a LAS-3000 luminescent image analyzer (Fujifilm) with AIDA image analyzer 4.06 software (Raytest). A representative whole-blot picture resulting from the detection of ABCA1 in the presence and absence of piperine is presented in the Supporting Information Fig. 1.
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8

Macrophage Protein Expression Analysis

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THP-1 cells were seeded in 6-well plates and differentiated into macrophages with 200 nM PMA for 72 h. The macrophages were treated with the indicated compounds at the corresponding time points, as described in detail in each figure legend. Cellular proteins were extracted using NP40 buffer (150 mM NaCl; 50 mM HEPES (pH 7.4); 1% NP40; 1% protease inhibitor Complete™ (Roche); 1% phenylmethylsulfonyl fluoride (PMSF); 0.5% Na3VO4; 0.5% NaF) and quantified with the Bradford method. For western blot analysis, an equal amount of protein (20 μg) was separated via SDS-PAGE and transferred onto a PVDF membrane. The membrane was blocked for 1 h at room temperature with 5% non-fat milk, and then incubated at 4°C overnight with primary polyclonal antibody against ABCA1, ABCG1 or SR-B1 (1:500) or actin (1:10,000). After being washed for three times (15 min each time), the membranes were incubated with a secondary antibody [horseradish peroxidase-conjugated goat anti-rabbit (1:500) or anti-mouse (1:10,000)] for 1 h at room temperature. The signals were detected and visualized using a LAS-3000 luminescent image analyzer (Fujifilm, Düsseldorf, Germany) using AIDA image analyzer 4.06 software (Raytest, Sprockhövel, Germany). The indicated protein band intensity was normalized to that of actin.
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