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4 protocols using f ara a

1

Quantification of F-araA in Plasma

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F-araA (Cat no: F2773) and the internal standard (IS) 5-flurocytidine (5-FC; Cat no: 543020) were purchased from Sigma-Aldrich, Bengaluru, India. The other reagents and chemicals N, N-Dimethylformamide, acetonitrile, ammonium acetate and acetic acid used were of Mass spectrometry grade from Fluka Analytical (Sigma-Aldrich Co., St Louis, MO, USA). Standards for F-araA assay were prepared in drug-free blank plasma (obtained from the Christian Medical College hospital blood bank).
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2

Characterization of Apoptosis-Resistant MEC1 Cells

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MEC1 cells were provided by Dr. M. Hallek (Uniklinik Koeln). The immunophenotype matched the original description and the complex karyotype was highly similar to what was previously described [14 (link)]. p53 dysfunction was confirmed by the absence of p53 protein (Western blot) and absence of up-regulation of PUMA mRNA (RT-MLPA) and CD95 (FAS; fluorescence activated cell sorting [FACS]-staining) upon radiation (Supplementary Figure 2 to be found online at http://informahealthcare.com/doi/abs/10.3109/10428194.2014.996751). Cells were cultured in Iscove modified Dulbecco medium (IMDM; Gibco Life Technology, Paisley, UK) supplemented with 10% (vol/vol) heat inactivated fetal calf serum (FCS; ICN Biomedicals, Meckenheim, Germany), 100 μg/mL gentamycin and 5 mM L-glutamine (Invitrogen, Carlsbad, CA) at 37°C.
For CD40 stimulation, the CD40-ligand transfected cell line HeLa-CD154 (for control: mock-transfected HeLa cells) was used (American Type Culture Collection [ATCC], Manassas, VA) as described previously [15 (link)]. In the synergy experiments the following drugs and reagents were used: CDDP (Mayne Pharma, Brussels, Belgium), CpG oligonucleotide type B-Human TLR9 ligand (ODN2006; Invivogen, San Diego, CA), F-ara-A (Sigma-Aldrich, St Louis, MO), imatinib (Novartis, Basel, Switzerland) and CH11 (Beckham Coulter Company, Marseille, France).
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3

Preparation of KV1.3 Inhibitor Solutions

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F-ara-A (Sigma–Aldrich) was dissolved in DMSO to yield stock solution of 35 mM from which further dilutions in the patch-clamp external solution were made. The KV1.3 selective inhibitor 5-(4-phenoxybutoxy)psoralen (PAP-1; Sigma–Aldrich) was dissolved in DMSO to yield stock solution of 1 mM from which further dilutions in the patch-clamp external solution were made.
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4

Investigating Anticancer Synergies

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PEITC, F-ara-A, N-acetylcysteine (NAC), Oxaliplatin, Propidium Iodide (PI) and Ethyl Acetate (Et Ac) were purchased from Sigma-Aldrich (St. Louis, MO). Pluronic® F127 (F127) was purchased from Sigma (USA). Fludarabine used in the survival experiment was purchased from the Pharmacy of MD Anderson Cancer Center. PEITC was dissolved in Dimethyl Sulfoxide (DMSO) to make a 10 mM stock solution and PEITC working solution was freshly prepared by diluting the stock solution in culture medium. Ficoll-lite Lympho H was from Atlanta Biological (Lawrenceville, GA). CD19 microbeads were purchased from MACS Miltenyi Biotech Inc. (Auburn, CA). ACK lysis buffer and Annexin V-FITC were from BD Biosciences (San Jose, CA). CM-H2DCF-DA was purchased from Invitrogen (Carlsbad, CA). Terminal deoxynucleotidyl transferase deoxyuridine-triphosphatase nick-end labeling (TUNEL) staining kit was purchased from Roche Applied Science (Indianapolis, IN). A glutathione assay kit was purchased from Cayman Chemical (Ann Arbor, MI). Anti-MCL-1 was from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-LC3 was purchased from EMD Millipore Corporation (Billerica, MA). Anti-β-actin was purchased from Cell Signaling Technology Inc. (Danvers, MA).
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