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9 protocols using 4 coumaric acid

1

Antioxidant Compounds Extraction and Analysis

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The reagents sodium carbonate, di-sodium hydrogen phosphate, sodium carbonate, potassium ferricyanide, potassium persulfate, ethylenediamine tetra acetic acid (EDTA) and gallic acid were purchased from Scharlau (Barcelona, Spain). Folin–Ciocalteu’s phenol reagent, absolute ethanol and trichloroacetic acid (TCA) were purchased from Panreac (Castellar del Vallès, Barcelona, Spain). 2,2-diphenyl-1-picrylhydrazyl (DPPH•) free radical, Iron (II) Chloride 4-hydrate, 6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylacid (Trolox), (L)-Dehydroascorbic acid and malondialdehyde (MDA) were purchased from Sigma Chemical Co. (Steinheim, Germany, and St. Louis, MO, USA). Propylgallate (PG) was purchased from Acrōs Organics (Fair Lawn, NJ, USA). 2-Thiobarbituric acid (TBA) was purchased from Merck KGaA (Darmstadt, Germany). The following standards were used: phenolic acids—hydroxybenzoic acid, vanillic acid, protocatechuic acid; cinnamic acids—chlorogenic acid, 4-coumaric acid; flavanols—catechin; flavonols—kaempferol, quercetin, kaempferol-3-O-rutinoside, kaempferol-3-O-glucoside, isorhamnetin-3-O-rutinoside, rutin or quercetin-3-O-rutinoside; flavanones—naringenin, eriodictyol, eriodictyol-7-O-glucoside (Merck KGaA, Darmstadt, Germany).
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2

Comprehensive Phytochemical Analysis of Plant Extracts

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Hydrochloric acid (HCl), sodium phosphate monobasic, sodium phosphate dibasic, catechol, Folin–Ciocalteu’s phenol reagent, gallic acid, methanol, ethanol, sodium carbonate, formic acid, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), 2,4,6-tripyridyl-striazine, Iron(III) chloride hexahydrate, sodium acetate anhydrous, acetic acid, sodium hydroxide, potassium hydroxide (KOH), guar gum, methanol, 2,2-diphenyl-1-picrylhydrazyl (DPPH), phytochemical standards (quinic acid, chlorogenic acid, caffeic acid, rutin, 4-coumaric acid, ferulic acid), and the enzymes (pepsin, invertase, amyloglucosidase, and pancreatin) were purchased from Merck Ltd. (formerly Sigma Aldrich Ltd., Wicklow, Ireland).
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3

Synthesis and Characterization of Carboxylic Acid Derivatives

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Malonic acid, 2-13C-Malonic acid, 4-coumaric acid, 2-methylthiazole-5-carboxylic acid, resveratrol, p-coumaric acid, 7-phenyl heptanoic acid, 6-phenyl hexanoic acid, 5-(4-flurophenyl)valeric acid, 4-biphenylacetic acid, N-acetyl-L-cysteine, benzoic acid adenosine triphosphate (ATP), coenzyme A trilithium salt (CoA), magnesium chloride, dimethyl sulfoxide (DMSO) hexahydrate, phospho(enol) pyruvate potassium salt, PEG 4000, NaCl, potassium and sodium phosphate, IPTG, kanamycin, penicillin, streptomycin, were purchased from Sigma-Aldrich. 2-Chloro-1,3-thiazole-5-carboxylic acid and 4-methylthiazole-5-carboxylic acid were obtained from Matrix Scientific.
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4

Phytochemical Profiling and Antioxidant Analysis

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Gallic acid, quercetin, formic acid, tryptophan, catechin, epigallocatechin, chlorogenic acid, vanillin, epicatechin, cyanidin-3-O-glucoside, 4-coumaric acid, isoquercitrin, myricetin, quercitrin, and naringenin, Folin-Ciocalteu reagent, DPPH (2,2-diphenyl-1-picrylhydrazyl), methanol analytical grade, aluminum chloride, sodium acetate, and sodium carbonate were purchased from Sigma Aldrich (Merck; Darmstadt, Germany).
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5

Enzymatic Biocatalysis Protocols

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The bacterial strains and plasmids used in this study are listed in Table 1. Antibiotics were added to the medium at the following concentrations: kanamycin, 50 mg/L; ampicillin, 100 mg/L. Ferulic acid, cinnamic acid, 4-coumaric acid, and caffeic acid were purchased from Sigma-Aldrich (United States) and used as substrates for in vitro and/or in vivo reactions and standard for product identification by high-performance liquid chromatography (HPLC). Coenzyme A (CoA), adenosine triphosphate (ATP), and malonyl-CoA were purchased from Sigma-Aldrich for enzyme activity assays. The restriction enzymes (NEB, United States; Takara, Japan), AccuPower Ligation kit (Bioneer, Korea), and KOD-plus-DNA polymerase (TOYOBO, Japan) were used according to the manufacturer’s instructions.
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6

Biosynthesis of Stilbene Derivatives

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E. coli DH5α and E. coli C41 (DE3) [30 (link)] were used in the general DNA manipulation and expression of biosynthetic genes, respectively. T-blunt vector (Solgent, Korea) was used in the polymerase chain reaction (PCR) cloning. pET-22b(+) and pET-28a(+) were purchased from Novagen (USA). 4-coumaric acid, resveratrol, pterostilbene, and 3,5,4’-trimethoxystilbene were purchased from Sigma-Aldrich (USA). Pinostilbene was purchased from Tokyo Chemical Industry, Co (Japan). IPTG was purchased from A.G. Scientific, Inc (USA). NMR solvent was purchased from Cambridge Isotope Laboratories, Inc. (USA). Hypergrade solvent for LC-MS was purchased from Merck KGaA (Germany).
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7

Persimmon Astringency Removal and Yeast Cultivation

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Persimmon (Diospyros kaki L. cv. Mopan) was collected from Baoding City, Hebei Province of China in October 2018. The fruits were treated with CO2 to remove astringency and stored at −20°C until use. Active wine dry yeast (Saccharomyces cerevisiae) was purchased from Angel Yeast Co., Ltd. (Yichang, China).
The standard compounds of gallic acid, protocatechuic acid, catechin, vanillic acid, syringic acid, 4‐coumaric acid, syringaldehyde, ferulic acid, guaiacol, benzoic acid, salicylic acid, quercetin, 3‐octanol and methanol, ethanol, acetonitrile (HPLC grade), acetic acid, rutin, and ethyl acetate were purchased from Sigma‐Aldrich (St. Louis). Folin–Ciocalteu, Na2CO3, Al (NO)3, Na OH, HCl, Fehling reagent, glucose, pectinase (pectinase > 3.5 × 104 U g−1, cellulase > 9 × 104 U g− 1), and other chemicals were of analytical grade and purchased from Fluka (Buchs, Switzerland).
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8

Cellular Antioxidant Assay Protocol

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2,7-dichlorofluorescein diacetate (DCFH-DA), 2,2′-Azo-bis-aminopropane (ABAP) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Hanks' Balanced Salt Solution (HBSS), fetal bovine serum (FBS) and Dulbecco's modified Eagle's medium (DMEM), and other cell culture reagents were purchased from Gibco (Invitrogen, Barcelona, Spain). Methyl syringate, epicatechin, syringic acid, catechin, 4-coumaric acid, gallic acid, quercetin, apigenin, luteolin, kaempferol, naringenin, formononetin, genistein, 3-coumaric acid, daidzein, pelargonidin, 2-coumaric acid, biochanin A and cyanidin were purchased from Sigma. Ultrapure water was obtained using a Milli-Q system (Millipore, Bedford, MA, USA) and methanol, acetonitrile and 2-propanol were purchased from Teknokroma (Barcelona, Spain). All other chemicals were of analytical grade.
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9

Characterization of Phenolic Compounds

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Sodium hydroxide, citric acid, trans-ferulic acid, trans-isoferulic acid, sinapic acid, caffeic acid, 4-hydroxybenzoic acid, 3’-coumaric acid, 4’-coumaric acid, vanillic acid (3-methoxy-4-hydroxybenzoic acid), protocatechuic acid (3,4-dihydroxybenzoic acid), 3’,4’-dihydroxyphenylacetic acid, 3-(3’-hydroxyphenyl)propionic acid, 3-(4’-hydroxyphenyl)propionic acid, 3-(3’,4’-dihydroxyphenyl)propionic acid (aka dihydrocaffeic acid), 3-(3’,5’-dihydroxyphenyl)propionic acid, 3-(3’-methoxy-4’-hydroxyphenyl)propionic acid (aka dihydroferulic acid), and hippuric acid were purchased from Sigma-Aldrich (St. Louis, MO, USA) as were secoisolariciresinol, enterolactone and enterodiol. Homovanillic acid (3’-methoxy-4’-hydroxyphenylacetic acid) was purchased from Extrasynthese (Genay Cedex, France). Ferulic acid-4’-O-sulphate disodium salt, isoferulic acid-3’-O-β-D-glucuronide, and dihydrocaffeic acid-3’-O-sulphate sodium salt were purchased from Toronto Research Chemical, (Toronto, Canada). Daidzein was purchased in part from AASC. Ltd (Southampton, UK) and in part provided by Prof. Alan Crozier (Department of Nutrition, University of California, Davis, CA, USA).
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