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6 protocols using anti cd38 apc

1

Quantification of Human Hematopoietic Stem Cells

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Absolute numbers of viable human CD34+ cells were determined by a single platform flow cytometric assay using anti‐FITC‐CD45, anti‐CD34‐PE, and Stem‐Count Fluorospheres from the Stem‐Kit Reagents kit (Beckman Coulter) and DAPI (Sigma). The frequencies of human phenotypic HSCs were determined using anti‐Lin‐FITC, anti‐CD38‐APC, anti‐CD90‐PE (Thermo Fisher Scientific), anti‐CD34‐PE‐Cy7, anti‐CD45RA‐APC‐H7 (BD Biosciences), and DAPI. All samples were analyzed using BD FACSCanto II (BD Biosciences), and the data were analyzed using FlowJo software (Tree Star, Inc, Ashland, OR, USA).
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2

Quantifying Human Hematopoietic Stem Cells

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Absolute numbers of viable human CD34+ cells were determined by a single platform flow cytometric assay using anti-FITC-CD45, anti-CD34-PE, and Stem-Count Fluorospheres - from the Stem-Kit Reagents kit (Beckman Coulter) and DAPI (Sigma). The frequencies of human phenotypic HSCs were determined using anti-Lin-FITC, anti-CD38-APC, anti-CD90-PE (Thermo Fisher Scientific), anti-CD34-PE-Cy7, anti-CD45RA-APC-H7 (BD Biosciences) and DAPI. All samples were analyzed using BD FACSCantoII (BD Biosciences), and the data was analyzed using FlowJo software (Tree Star, Inc., Ashland, OR, USA).
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3

Immunophenotyping of Bone Marrow Cells

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Immunophenotyping of bone marrow (BM) was performed using an FC500 or Facscalibur flow cytometer. FACS buffer was made with PBS+2mM EGTA+2% FBS. Primary AML and leukemic stem cell fractions were detected using the following antibodies (company; product #; clone): anti-CD34 PE (BD bio-sciences; 348057; 8G12), anti-CD34 FITC (BD Pharmingen; 555821; 581), anti-CD38 APC (ebiosciences; 17-0389-42; HIT2) and anti-CD123 PE (BD Pharmingen; 558714; 7G3), anti-CD45 APC (BD Pharmingen; 557513; TU116) and anti-class I HLA A, B, C (Biolegend; 311404; W6/32). NK-92 cells lines were assessed for CD16 expression using CD16 PE (Biolegend; 302008; 3G8). Leukemia cell lines were evaluated using anti-CD123 PErCy5.5 (BD Biosciences; 560904; 7G3). Cell sorting was performed using a FacsAria cell sorter as described in the Online Supplementary Methods.
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4

Purification and FACS of mouse GC and non-GC B cells

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Spleen and PPs were dissected out from 8–12 weeks old mice, prepared into single cell suspensions and purified by EasySep® Negative Selection B cell Enrichment Kit (Stem Cell Techonologies) according to the manufacturer’s protocol. Purified B cells were stained with anti-B220-PE (1:2000) (eBiosciences), anti-CD38-APC (1:200) (eBiosciences) and anti-GL7-FITC (1:200) (Biolegend). GC (B220+GL7+CD38) and nonGC (B220+GL7CD38+) B cells were sorted from the same sample by fluorescence-activated cell sorting (FACS) in the Department of hematology/oncology flow cytometry research facility at Boston Children’s Hospital. Genomic DNA from sorted cells was prepared using a DNeasy Blood and Tissue Kit (Qiagen) according to the manufacturer’s protocol. 4 to 18 independent mice were analyzed for each category as indicated in the respective figures.
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5

Phenotypic Characterization of B Cell Subsets

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Peripheral venous whole blood was collected from subjects, and 0.83% ammonium
chloride was used to separate red blood cells. Whole blood was then stained with
the following fluorescent antibodies: anti-CD24-FITC, anti-CD19-PE,
anti-CD27-PEcy5, and anti-CD38-APC (eBioscience, San Diego, CA, USA).
Fluorescently-stained cells were then detected by BD FACSVerse flow cytometry
(BD Biosciences, San Jose, CA, USA). Peripheral venous blood B cells
(CD19+ lymphocytes) were divided into Breg cells
(CD19+CD24hiCD38hi), memory B cells
(CD19+CD27+CD24hi), and plasma cells
(CD19+CD27hiCD38hi).
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6

Profiling B Cell Subsets and Receptor Expression

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We processed PBMCs of the entire study population in four different batches. Frozen PBMCs were thawed, washed twice with PBS (Fisher Scientific) and stained with live/dead marker (Zombie Yellow™ Fixable Viability dye, eBioscience) and fluorochrome-conjugated antibodies against surface markers: anti-CD19 BV510, anti-CD24 BV421, anti-IgD APC-Cy7 (all BioLegend); anti-CD27 AF-700, anti-CD38 APC, anti-CD40 PE-Cy7, anti-BAFF-R FITC (all eBioscience); anti-CD86 PE-CF594, and anti-TACI BV650 (all BD Biosciences). A total of five B cell subpopulations could be measured using the following gating strategy as previously reported (18 (link)): total (CD19+), transitional (CD19+CD24hiCD38hi), naïve (CD19+CD27-), unswitched memory (CD19+CD27+IgD+) and switched memory B cells (CD19+CD27+IgD-). We measured expression of CD40, BAFF-R and TACI as percentage of positive cells for all five B cell subsets and as mean of fluorescence intensity (MFI) across positive cells for each cell type. The absolute cell counts of plasmablasts (CD19+CD24-CD38hi) were too low (< 100 cells) to reliably determine expression levels. Data were collected on BD Symphony flow cytometer (BD Biosciences). For data analysis, we used FlowJo (LLC, V10). Supplementary Figure 1 shows representative FACS plots.
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