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18 protocols using anti cd19 apc cy7

1

Chronic Lymphocytic Leukemia Cell Profiling

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CD5, CD19 and CXCR4 membrane expression levels were analyzed by flow cytometry (FACS-CANTO II; Becton Dickinson) after labeling with the indicated conjugated monoclonal antibodies (mAbs): PE-Cy7-anti-CD5, APC-Cy7-anti-CD19, APC-anti-CXCR4, PE-CXCR5 and FITC-CD62L or the respective control IgG isotype mAbs (BD Biosciences, Pont-de-Claix, France). Cell viability and plasma membrane CXCR4, CXCR5 and CD62L expression levels were determined in CD19+/CD5+ CLL cells. Data acquisition and analysis were performed using BD FACSDiva software. A threshold was arbitrarily set up case-by-case on untreated cells to include at least 90% of CXCR4high or CXCR5high or CD62Lhigh cells. BCR- and PMA-dependent CXCR4 or CXCR5 or CD62L membrane decreases were calculated as follows:
100 - ((% CXCR4high/CXCR5high/CD62Lhigh after IgM stimulation ×100) / (% CXCR4high/CXCR5high/CD62Lhigh before IgM stimulation)).
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2

Multiparametric Flow Cytometry for Cell Sorting

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Peridinin chlorphyll protein (PerCP) anti CD45 (pan-leukocyte antigen), phycoerythrin-conjugated antibodies anti-CD117 (for precursors), fluorescein isothiocyanate- conjugated (FITC) anti-CD15 and anti-CD33 (for myeloid cells), Texas Red conjugated anti-CD3 (for T-lymphocytes) and allophycocyanin-cyanin7-conjugated (APC-Cy7) anti-CD19 (for B-lymphocytes) were used for sorting (BD Biosciences, Milan, Italy). Staining of healthy donor BM cells was performed in standard conditions, and sorting was performed using FACSAria (BD Biosciences). Data were analyzed using FACS Diva Software (v8.0.1, BD Biosciences).
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3

Multiparameter Flow Cytometric Analysis of Immune Cells

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Cells from draining lymph nodes were first blocked with 20 μg/mL 2.4G2 antibodies (BioXcell) then stained with indicated antibodies in MACS buffer (PBS supplemented with 5 mM EDTA and 1% FBS). Staining reagents are as follows: PE-Cy7 anti-CD4, efluor450 anti-CD4, APC-Cy7 anti-B220, APC-Cy7 anti-CD19, PE-Cy7 anti-CD95, and PE anti-IgMa (BD Biosciences); efluor450 anti-GL7, streptavidin-PE, streptavidin-APC (eBioscience); FITC anti-CD4, PE-Cy7 anti-PD1 (Biolegend); biotinylated anti-CXCR5 and PE anti-CXCR5 (Miltenyi). Isotype-matched control antibodies were also used when necessary. Cells were first incubated with primary antibodies on ice for 30−90 min, washed with MACS buffer, and incubated with secondary antibodies for an additional 30 min. Data were collected on either LSR II or Aria III cytometer (BD Biosciences) and analyzed with the FlowJo software (TreeStar). Dead cells and cell aggregates were excluded from the analyses based on characteristics of forward- and side-scattering and staining of 7-amino-actinomycin D (7-AAD) (Biotium).
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4

Isolation and Sorting of PBMC Subsets

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Single-cell suspensions of freshly isolated PBMCs were labeled at 4°C with the following mAbs: anti-CD3 pacific orange (Invitrogen), anti-CD14 pacific orange (Invitrogen), anti-CD19 APC-Cy7 (BD Pharmingen), anti-CD27 PE (BD Pharmingen), and anti-IgD FITC. Live CD19pos B cells were subdivided into CD27pos memory and CD27pos/IgDneg naïve or separately, CD27pos/IgDneg switched memory and CD27pos/IgDpos unswitched memory, and sort-purified on a FACSAria cell sorter (BD) into FACS buffer. Samples were stored at −80°C in cell lysis buffer until RNA extraction for microarray analysis.
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5

Multiparameter Flow Cytometry of PBMCs

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After thawing, single-cell suspensions of PBMCs were labeled at 4°C with the following mAb conjugates: anti-CD1c biotin (Miltenyi), anti-CD3 Pacific Orange (Invitrogen, Carlsbad, CA), anti-CD19 APC-Cy7 (BD Pharmingen, San Diego, CA), anti-CD21 PE-Cy5 (BD Pharmingen), anti-CD23 PE-Cy7 (eBioscience), anti-CD24 PE (BD Pharmingen), anti-CD27 Qdot605 (Invitrogen), anti-IgD FITC (BD Pharmingen), Streptavidin PE-Alexa610 (Invitrogen). Dead cells were excluded with Live/Dead fixable Aqua dead cell staining kit (Invitrogen). 5x105 – 106 events were collected for each sample on an LSRII flow cytometer (BD). FlowJo (Tree Star) was used for gating analysis.
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6

Comprehensive Immune Cell Profiling

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PBMCs, LNs, and tumor cell suspensions at 0.5x106 cells/sample were washed in PBS containing 2% FCS and 0.05% NaN3 (FACS-buffer). To investigate lymphocyte subtypes and their functions, staining was performed with fluorophore-conjugated antibodies: Blue Live/Dead stain, anti-CD4 Pacific-Blue, anti-CD8 APC, anti-CD19 APC-Cy7, and anti-CD56 PE (Becton Dickinson-BD, Franklin Lakes, NJ, USA). Cells were investigated with LSRFORTESSA (BD) and analyzed by using the FACS DIVA software (BD).
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7

Antigen presentation assays for CD8+ and CD4+ T cells

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The ex vivo Ag presentation assays were performed using a protocol adapted from Langlet et al. OVA-specific CD8+ T and CD4+ T cells were isolated from OTI and OTII transgenic mice, respectively, and labeled with 10 µM CFSE. 105 OT-I T cells or 105 OT-II T cells were subsequently co-cultured for 48 hours with respectively 104 sorted Ly6Chi monocytes, MHCIIhi DCs or MHCIIint DCs obtained from the DLN of mice previously (24 h) immunized with 20 µl of an OVA (100 µg/ml)/CpG (100 µg/ml) mixture. OT-I and OT-II proliferation was determined by the loss of CFSE fluorescence by flow cytometry. Sorts were performed using a FACSAria sorter (BD Biosciences).
In vivo antigen presentation assays were performed through adoptive transfer of 2 × 105 CFSE labeled OT-I or OT-II cells to respectively WT C57BL/6 J mice, CCR2−/− mice, CCR7−/− mice and Flt3L−/− mice 48 hours prior to OVA/CpG immunization. Four days post immunization, DLN were dissected, stained with anti-CD3-V450, anti-CD4-PerCP, anti-CD8-PerCP, anti-Vα2 TCR-PE, anti-CD19-APC-Cy7 (all BD Biosciences), PE-labeled SIINFEKL specific dextramers (Immudex) and measured on a LSRII flow cytometer (BD Biosciences).
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8

Congenic Bone Marrow Transplantation

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On day-1 prior to transplantation, recipient congenic B6 Pepboy mice (CD45.1) received a total of 11 Gy irradiation, divided into two doses of 5.5 Gy given 3 hours apart [39 (link)]. On day 0, mice were injected i.v. with 5 million BM cells from WT B6 donors (CD45.2) or IL-12p40 KO donors (CD45.2). Chimerism was confirmed a minimum of 50 days post-transplant using flow cytometric analysis of blood stained with anti-CD3-PE-Cy7, anti-CD19-APC-Cy7, anti-CD45.1-PE, anti-CD45.2-FITC, anti-CD90.1-PerCP, and anti-CD90.2-APC (BD Biosciences, San Diego, CA).
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9

Comprehensive Immune Cell Profiling

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B- and T-cell subsets were enumerated in freshly thawed cryopreserved PBMCs. After washing and counting viable cells, PBMCs were surface-stained with the following conjugated mAbs: anti-CD3-AF488 (Biolegend; clone HIT3a), anti CD8-APC/Cy7 (Biolegend; SK1), anti-CD19-APC/Cy7 (BD Biosciences; SJ25C1), anti-CD19-PerCP/Cy5.5 (Biolegend; HiB19) anti-CD25-PE/Cy7 (Biolegend; BC96), anti-CD21-PE/Cy7 (BD Biosciences; B-ly4), anti-CD27-PerCP/Cy5.5 (BD Biosciences; M-T271), anti-CD38-PE/Cy7 (Biolegend; HIT2), anti-HLA-DR-PerCP/Cy5.5 (Biolegend; L243); anti-CD10-FITC (BD Biosciences; W8E7), anti-IL21R-PE (BD Biosciences; 17A12), and anti-CD39-APC (Biolegend; A1). Cells were fixed and permeabilized with Cytofix/Cytoperm (BD Biosciences), and stained with anti-IL-10-PE (R & D Systems; 127107), anti-FOXP3-PE (Biolegend; 206D) and anti- TGFβ-PE (Biolegend; TW4-2F8), and analyzed with Guava easyCyte 8HT and FlowJo (Treestar). Subsets were expressed as percentages of the parent CD4+, CD8+ and CD19+ cell populations. The gating strategy is presented in S2 Fig.
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10

CYNK Cell Cytotoxicity Assay for Influenza

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A549 cells were seeded at 104 cells per well in a 96-well plate in complete F-12K medium. PR8 infection was performed as described above. CYNK cells were added 24 hours post infection at an effector-to-target (E:T) ratio of 10:1 with anti-CD107a – BV786 (clone H4A3, BD) in assay buffer (RPMI (Gibco) with 10% FBS). After 1 hour, 2 μM monensin (Biolegend) and 3μg/ml Brefeldin A (BD) were added and incubated for 3 hours. Cells were stained with Live/Dead Fixable Aqua Stain (Thermo Fisher Scientific) and labelled with anti-CD56 (NCAM1) – Pe-Cy7 (clone: 5.1H11, Biolegend), anti-CD3 – APC-Cy7 (clone: sk7, BD), anti-CD14 – APC-Cy7 (clone: mΦp9, BD) and anti-CD19 – APC-Cy7 (clone: SJ25C1, BD). For intracellular cytokine staining, surface-stained cells were permeabilized using Cytofix/Cytoperm (BD) and cells were stained with anti-TNF-α - PE (clone: MAb11, BD) and anti-IFN-γ - APC (clone: B27, BD) antibodies. Cells were analyzed using Cytek Aurora (Cytek) and the data were analyzed using FlowJo Software (BD).
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