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9 protocols using donkey anti goat igg h l alexa fluor 488

1

Collagen-Induced Neuroinflammation Analysis

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Immunization Grade Bovine Type II Collagen (Cat. No. 20021; Chondrex), Naringenin (Cat. No. B21596; Shanghai Yuanye Bio-Technology Co., Ltd), and (S)-lacosamide ((S)-LCM) (provided by the laboratory of Dr. Ki Duk Park, Korea Institute of Science and Technology, Seoul, South Korea) were used in this study. Western blot experiments were performed using the following antibodies: rabbit anti-CRMP2 polyclonal antibody (1:5000; Cat. No. C2993; Sigma), rabbit anti-CRMP2 (Ser-522) phospho-specific polyclonal antibody (1:1000; Cat. No. CP2191; ECM), rabbit anti-CRMP2 (Tyr-479) phospho-specific polyclonal antibody (1:2000; Jia Xuan biological), rabbit anti-CDK5 monoclonal antibody (1:2000; Cat. No. ab207238; Abcam), and rabbit anti-GAPDH monoclonal antibody (1:1000; Cat. No. 5174; CST). Immunofluorescence experiments were performed using the following antibodies: rabbit anti-IBA1 antibody (1:200; Cat. No. 019-19741; Wako Chemicals), goat anti-GFAP antibody (1:200; Cat. No. ab53554; Abcam), rabbit anti-cFos antibody (1:200; Cat. No. ab208942; Abcam), rabbit anti-CRMP2, rabbit anti-pCRMP2 S522; goat anti-rabbit IgG H&L (Alexa Fluor® 488) (1:200; Cat. No. ab150077; Abcam); and donkey anti-goat IgG H&L (Alexa Fluor® 488) (1:200; Cat. No. ab150129; Abcam).
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2

Visualizing STING and NLRP3 in Frozen Sections

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The samples for confocal immunofluorescent staining were stored at −80°C for frozen sectioning. The frozen sections were cut into 4 μm slices, blocked and permeated with 3% BSA‐0.5% Triton for 30 min at room temperature, and incubated with primary antibody to detect P‐STING or NLRP3 (Abcam, Cambridge, England) at 4°C overnight. Donkey anti‐rabbit IgG H&L (Alexa Fluor 647; Abcam) or donkey anti‐goat IgG H&L (Alexa Fluor 488; Abcam) was used to visualize the primary antibody. Nuclei were stained with 4′, 6‐diamidino‐2‐phenylindole dihydrochloride (DAPI, Invitrogen) Images were captured and analyzed with a confocal microscope (Carl Zeiss).
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3

Immunofluorescence Staining of Leptin, Leptin Receptor, and GFAP

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Primary antibodies used for immunofluorescent staining included; Rabbit Anti-Leptin (Cat# PA1-052, RRID: AB_325787, ThermoFisher Scientific, Melbourne, VIC, Australia), Goat Anti-Leptin Receptor (Cat# L9536, RRID: AB_260442, Sigma-Aldrich, North Ryde, NSW, Australia) and Mouse Anti-GFAP (glial fibrillary acidic protein, Abcam, Melbourne, VIC, Australia) (Cat# ab10062, RRID: AB_296804, Abcam, Melbourne, VIC, Australia). Secondary antibodies included; Goat Anti-Rabbit IgG H&L Alexa Fluor® 488 (Cat# ab150077, RRID: AB_2630356, Abcam, Melbourne, VIC, Australia), Goat Anti-Mouse Alexa Fluor® 594 (Cat# ab150116, RRID: AB_2650601, Abcam, Melbourne, VIC, Australia) and Donkey Anti-Goat IgG H&L Alexa Fluor® 488 (Cat# ab150129, RRID: ab_2687506, Abcam, Melbourne, VIC, Australia). DAPI (4′,6-diamidino-2-phenylindole) (Cat# D9542, Sigma-Aldrich, North Ryde, NSW, Australia) was used to stain nuclei. Thioflavin-S (Cat# T1892, Sigma-Aldrich, North Ryde, NSW, Australia) was used in staining and visualizing β-amyloid plaques.
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4

Apoptosis Detection in Retinal Samples

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Eyes (n = 6/group) were collected on day 1 after OAB and fixed in 4% paraformaldehyde at 4 °C overnight. Then, 10% sucrose was used to dehydrate for 1 day and replaced with 20% sucrose for 8 h, followed by 30% sucrose overnight. Afterward, the eyeballs were embedded in optimal cutting temperature compound (Sakura Finetechnical Co., Tokyo, Japan) at −80 °C and sectioned into 10 μm slices through the optic disc. TUNEL staining (in situ Cell Death Detection Kit, TMR red, version 12, Roche, Basel, Switzerland) was performed according to the manufacturer’s instructions. For double staining of TUNEL and Brn3a, sections were first stained with goat polyclonal antibodies against Brn3a (1:500; Santa Cruz Biotechnology, Dallas, TX, USA) at 4 °C overnight, and then incubated with donkey anti-goat IgG H&L (Alexa Fluor 488; 1:500; Abcam, Cambridge, UK) secondary antibody together with TUNEL staining. The retinal sections were then stained with 4,6-diamidino-2-phenylindole (DAPI) and photographed using a confocal microscope (Zeiss LSM800 or Zeiss LSM880).
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5

Immunofluorescence Analysis of HA Expression in Transfected HEK293 Cells

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For the analysis of the HA expression in the transfected HEK293 cells, they were fixed in 4% PFA (paraformaldehyde) for 30 min at 40°C, washed with PBS and permeabilized in 0.1% Triton X-100. The cells were then incubated with primary goat Anti-Influenza A Antibody (Chemicon®, Sigma-Aldrich, #AB1074) in PBS with 0.1%/0.02% BSA/Triton X-100 at 40°C overnight. The next day, cells were incubated with Donkey Anti-Goat IgG H&L (Alexa Fluor® 488) (ab150133; Abcam) secondary antibodies for 1 h at room temperature. Nuclei were stained with 4,6-diamidino-2-phenylindole (DAPI) (300 nM). Images were acquired on ZOE Fluorescent Cell Imager (Bio-Rad).
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6

Immunofluorescence Staining of Microglia and Astrocytes

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Cells were fixed with 4% paraformaldehyde (PFA) in PBS on ice for 10 min. After washing with PBS with 0.1% Tween-20 (PBST) 5 times at room temperature (RT), cells were treated with 3% BSA in PBST at RT for 1 h. Then, primary antibodies (diluted by PBST containing 0.3% BSA) were added to each well, and the fixed cells were maintained at 4C for overnight. The dilution ratio is as followed; goat anti-Iba1 (1:1000, Abcam) for microglia, rat anti-glial fibrillary acidic protein (GFAP; 1:1000, Thermo Fisher) for astrocyte. After washing with PBST 5 times at RT, secondary antibodies (diluted by PBST containing 0.3% BSA) were added to each well, and the fixed cells were maintained at RT for 1 h. The dilution ratio is as followed; donkey anti-goat IgG H&L (Alexa Fluor 488) (1:1000, Abcam), donkey anti-goat IgG H&L (Alexa 568) (1:1000, Abcam), Rhodamine (TRITC) AffiniPure Donkey Anti-Rat IgG (H+L) (1:1000, Jackson Immuno Research Laboratories, Inc.). After 5 times washing with PBST, the stained cells were treated with Fluoro-Gel II,with DAPI (Electron Microscopy Sciences) at RT for 10 min, and then, cells were examined using a fluorescence microscope (Nikon).
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7

Immunofluorescence Staining of RANKL-Primed BMDMs

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Immunofluorescence staining was performed on fixed RANKL‐primed BMDMs, blocked with 5% BSA and incubated overnight with anti‐Galectin‑3 mAb (R&D Systems, Cat# AF1197) and anti‐LAMP‐1 (CD107a) Antibody (Sigma Aldrich, Cat# AB2971). The cells were, then, incubated with Alexa Fluor® 488 Goat anti‐Rat IgM Antibody (Biolegend, Cat# 408908), Alexa Fluor® 488 Donkey Anti‐Goat IgG H&L (Abcam, Cat# ab150129) and Alexa Fluor® 405 Goat Anti‐Rabbit IgG H&L (Abcam, Cat# ab175652). The nuclei were counterstained using Draq5TM (Thermo Scientific, Cat#62254) staining solution, and the slides were mounted using Aqua‐Poly/Mount (Polysciences, Cat# 1860620). The images were acquired using a Zeiss LSM 800 confocal microscope at 20 and 40× magnification and analyzed using the Zen (Black edition), Zen 3.2 (Blue edition) and Image J software.
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8

Immunohistological Analysis of Brain Sections

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For cryoprotection, brains were gradually immersed in 10, 20, and 30% sucrose in 24 h intervals and embedded in OCT compound (Leica Microsystems, Bensheim, Germany) with liquid nitrogen. The brains were cut into frozen coronal sections (30 μm) using a Leica CM3050 cryostat and then stored in a free-floating buffer. For immunohistological analysis, the sections were blocked in 5% normal chicken serum (containing 0.3% Triton X-100) for 1 h. After washing, the sections were incubated with primary antibodies against ionized calcium-binding adaptor molecule 1 (Iba-1, 1:200, 019-19741, Wako) or 5-hydroxytryptamine (5-HT, 1:200, ab66047, Abcam) overnight at 4°C. Subsequently, the sections were incubated with goat anti-rabbit IgG HRP (1:400, ab6722, Abcam) or Alexa Fluor® 488 donkey anti-goat IgG H&L (1:400, ab150129, Abcam) secondary antibodies for 2 h at RT. To analyze the Iba-1-positive cells, the sections were incubated with an avidin-biotin-peroxidase complex (VECTASTAIN ABC kit, Vector Laboratories) for 2 h. The peroxidase activity was visualized using a stable diaminobenzidine solution. To analyze the 5-HT-positive signal, the sections were exposed to DAPI (1:1,000, D9542, Sigma) to stain cell nuclei. Immunoreactivity was observed under an Axio-Phot microscope (Carl Zeiss, Germany). The intensity was quantified using ImageJ 1.46 software (NIH, Bethesda, MD, USA).
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9

Characterizing Leptin-Responsive Immune Cells

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LepR expression on naïve CD4+ T cells and TFH cells from WT mice were stained with leptin receptor (LepR) (Polyclone, R&D) with secondary antibody Alexa Fluor 488 Donkey Anti-Goat IgG H&L(Abcam).
Leptin-secreting cells in the spleen of WT mice were stained with the following antibodies conjugated with fluorochromes: Alexa Fluor 488 anti-mouse IgM (Clone: RMM-1, Biolegend), Brilliant Violet 421 anti-mouse CD4 (Clone: GK1.5, Biolegend), Alexa Fluor 555 leptin (Polyclone, Bioss), Brilliant Violet 421 anti-mouse CD19 (Clone: 6D5, Biolegend), Alexa Fluor 488 anti-mouse F4/80 (Clone: BM8, Biolegend), Nuclei were identified by DAPI staining. Images were obtained with confocal microscopy (Zeiss LSM 710, Zeiss), and analysed with Photoshop CS4 software (Adobe) and Zen software (Zeiss).
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