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3 protocols using cycb1

1

Protein Analysis of Cultured Cells and Tissues

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Cultured cells were directly lysed in RIPA buffer (Cell Signaling Technology) supplemented with protease inhibitors (Roche Diagnostics) and phosphatase inhibitor cocktail (EMD Biosciences). For lung tissues, samples were resuspended in RIPA buffer and homogenized using the FastPrep-24 5G bead beating grinder and lysis system (MP Biomedicals). Samples were then centrifuged at 12,000 rpm for 15 minutes to obtain clear lysates for subsequent protein studies. Sources of antibodies were as follows: KLF4 (catalog ab129473) and α-SMA (catalog ab7817), Abcam; COL1α2 (catalog PA5-50938l), Thermo Fisher Scientific; Fas (catalog 05-201) and FOXM1 (catalog ABE1000), MilliporeSigma; and CYCB1 (catalog 4135) and GAPDH-HRP conjugate (catalog 3683), Cell Signaling Technology. All antibodies were used on both human and mouse samples at a dilution of 1:1000 except GAPDH-HRP, which was used at a dilution of 1:3000. Protein quantification was performed by densitometric analysis of blots using ImageJ software (NIH). Protein levels are presented as relative to the control value, set at 1. Full, uncut gels for all the Western blots are shown in the supplemental material.
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2

Western Blot Analysis of Cell Signaling

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For direct IB analysis, cells were lysed in a Triton X-100 or RIPA buffer with phosphatase inhibitors. The antibodies used were as follows: HA (1:2000; Roche), CycG1 (1:500; Santa Cruz), PARP (1:1000; Cell Signaling), Cleavage-caspase-3 (1:500; Cell Signaling), Aurora A (1:1000; Cell Signaling), NOXA (1:1000; Millipore), Mcl-1 (1:1000; Cell Signaling), Bcl-2 (1:1000; Cell Signaling), Bcl-xL (1:1000; Cell Signaling), CycB1 (1:1000; Cell Signaling), p-Histone 3 (1:500; Cell Signaling) and β-actin (1:5000; Sigma).
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3

Western Blot Analysis of Cell Signaling

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Cell pellets were washed in ice-cold PBS and lysed using Ripa buffer freshly supplemented with protease inhibitor cocktail. Equal amounts of protein (15-30 ̀g) were loaded on a 12% SDS-PAGE and then transferred on a polyvinylidene diଏuoride membrane (Roche, Germany). After overnight incubation at 4 °C with speciଏc primary antibody and then the secondary antibody, proteins were visualized using ECL developing reagent on an Image Quant LAS 4000 (GE Healthcare, Germany). PARP (#9532), cleaved caspase 3 (#9661), CycE1 (#20 808), CycB1 (#12231), p53 (#2527), p73 (#14620), p27 (#3686), pAMPk (#2535), Myc (#13987), p-4EBP1 (#2855), and p-p70S6K (#9234) antibodies were purchased from Cell Signaling Technology. p21 (sc-6246) antibody was purchased from Santa Cruz Biotechnology. Tubulin (#T5168) was used as loading control and was obtained from Sigma-Aldrich.
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