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9 protocols using western lightning ecl system

1

Western Blot Analysis of Islet Proteins

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Islets were isolated as described above and homogenized in lysis buffer (Cell Signaling Technology) by sonication. Protein extracts were separated by SDS-PAGE (10% [v/v] Bis/Tris gel; Life Technologies), blotted on a nitrocellulose membrane, blocked in 4% (w/v) milk, and incubated with primary antibody (anti-hGH, ab15317, 1/1,000; anti-GAPDH, 1/15,000; clone 6C5, both from Abcam). The blot was subsequently incubated with peroxidase-conjugated secondary antibody (Dako), and proteins were detected using the Western Lightning ECL System (PerkinElmer). For hGH staining on islets from MIP-GFP and RIP-Cre mice, a similar protocol was used with adjustments: 10 μg of islet protein sample in 1× Laemmli sample buffer was resolved on 15% SDS-PAGE and transferred to polyvinylidene difluoride membranes (EMD Millipore).
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2

Fungal Protein Extraction and Western Blot

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Strains were cultured on DPY medium for 18 h. The fungal mycelia were frozen in liquid nitrogen and subsequently ground using a multi-bead shocker. After extraction, cell lysates were incubated with a buffer containing detergent NP-40 [50 mM Tris-HCl (pH 8.0), 200 mM NaCl, 1 mM/mL PMSF, 1× Protease Inhibitor Cocktail (Sigma, St. Louis, MO, USA: P8215), 1% NP-40] to solubilize the membrane proteins. Mycelial extract solubilized with the buffer was incubated in ice for 20 min. After centrifugation at 1000×g for 10 min, the supernatant was collected. Cell lysates were separated using SDS-PAGE. The proteins were transferred to Immobilon-P polyvinylidene difluoride (PVDF) membranes (Millipore Sigma, Burlington, MA, USA) using a semidry blotting system (Nihon Eido, Tokyo, Japan). To detect EGFP, Living Colors® A.V. (anti-GFP) monoclonal antibody (1: 2000 dilution, cat # 632380, Clontech) and peroxidase-labeled anti-mouse IgG (H + L) antibody (1: 2000 dilution, cat # PI-2000, Vector Laboratories, Newark, CA, USA) were used as primary and secondary antibodies, respectively. Chemiluminescence was detected using a Western Lightning-ECL system (PerkinElmer, Waltham, MA, USA) and an LAS-4000 image analyzer (GE Healthcare, Buckinghamshire, UK).
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3

SDS-PAGE, Western Blotting, and Native PAGE

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SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and western blotting were performed as previously described (44 (link)). Env was detected using MAb PA1 (0.2 µg/ml) and a 1:5000 diluted secondary HRP-labeled goat-anti-mouse IgG (Kirkegaard & Perry Laboratories, Maryland, USA) followed by the Western Lightning ECL system (PerkinElmer, Groningen, The Netherlands). Native PAGE was carried out as reported elsewhere (35 (link)).
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4

Western Blot Analysis of Ago2 Pulldown

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For SDS-PAGE western blot the samples obtained in the Ago2 pull down assays were mixed with an appropriate amount of loading dye (25 mM Tris, 192 mM Glycine, 20% v/v glycerol, 4% m/v SDS, 0.1% v/v bromophenol blue in milli-Q water). The samples were denatured at 95°C for 5 minutes before electrophoresis on a Novex 6% Tris-glycine gel (Invitrogen). The samples were transferred to an Immobilin-P Transfer Membrane at 25V for 50 minutes. The membrane was then blocked for 60 minutes in 5% milk powder in PBS. The membrane was washed with 0.1% milk-PBS and incubated overnight at 4°C in 10 ml 0.1% milk-PBS with anti-FLAG primary antibody (1:5000) or alpha-actin (1:5000) with slow orbital mixing. After overnight incubation, the membrane was washed 3–4 times for 5 minutes with 0.1% milk-PBS and then incubated for at least one hour with slow orbital mixing in 10 ml 0.1% milk-PBS with goat anti-mouse secondary antibody (1:5000). The membrane was washed 2 times for 5 minutes in PBS-Tween, 2 times for 5 minutes in PBS and 2 times for 5 minutes in deionized H2O. The Western Lightning ECL system (PerkinElmer Life Sciences) was used for luminometric detection with the LAS4000.
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5

Western Blot Protein Quantification

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Protein concentrations were determined using the Pierce BCA Protein assay kit (Thermo Fisher Scientific). Proteins were denatured, separated by SDS-PAGE and transferred to a nitrocellulose membrane. Membranes were blocked with 5% nonfat dry milk in PBS with 0.2% Triton X-100. Membranes were labeled overnight with primary antibody at 4°C. Subsequently, the blot was incubated with horseradish peroxidase-conjugated secondary antibodies (Dako) and proteins were detected with the Western Lightning ECL System (Perkin Elmer). Images were quantified using ImageJ software (Schneider et al., 2012 (link)).
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6

SDS-PAGE and Western Blotting for Protein Detection

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SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and western blotting were performed as previously described [40] (link). Env was detected using MAb PA1 (0.2 µg/ml) and HRP-labeled goat anti-mouse IgG (1∶5000; Kirkegaard & Perry Laboratories, Maryland, USA) followed by the Western Lightning ECL system (PerkinElmer, Groningen, the Netherlands) and His-tagged cytokines (hAPRIL, rAPRIL and rCD40L) were detected using anti-His MAb (0.25 µg/ml) followed by HRP-labeled goat anti-mouse IgG (1∶5000; Kirkegaard & Perry Laboratories).
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7

Detecting Protein-Protein Interactions via BiFC

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Mycelia of the strain NgACgB1, expressing nEGFP-LZA and cEGFP-LZB, were inoculated into 20 ml DPY liquid medium and incubated at 30 °C for 18 h. The frozen mycelia (250 mg) were homogenised with a Multi-beads Shocker (Yasui Kikai, Osaka, Japan) and then suspended in 1 ml extraction buffer (250 mM sucrose, 50 mM Tris-HCl (pH 8.0), and 1 mM phenylmethylsulfonyl fluoride [PMSF]) supplemented with 1% protease inhibitor cocktail (Sigma, St. Louis, MO, USA). The lysate was centrifuged at 1,000 × g for 10 min, and the supernatant was analysed by SDS-PAGE on 15% polyacrylamide gel. For immunoblotting, proteins in the gel were transferred onto Immobilon-P polyvinylidene difluoride (PVDF) membranes (Millipore, Bedford, MA, USA) via a semidry blotting system (Nihon Eido, Tokyo, Japan). For detection of nEGFP and cEGFP, anti-GFP polyclonal antibody (Code No. 598, MBL, Nagoya, Japan) was used. Chemiluminescence was detected using a Western Lightning-ECL system (PerkinElmer, Waltham, MA) and an LAS-4000 image analyser (GE Healthcare, Buckinghamshire, UK).
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8

Immunoprecipitation and Western Blotting

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Cells were washed twice with ice-cold phosphate-buffered saline (PBS) and then lysed with 1% Nonidet P-40 lysis buffer (20 mM Tris, pH 8.0, 137 mM NaCl, 1% Nonidet P-40, 10% glycerol, 1 mM Na3VO4, 1 mM phenylmethylsulfonyl fluoride, 10 mg/ml aprotinin, and 20 mg/ml leupeptin) on ice for at least 20 min. Next, lysates were collected and clarified by centrifugation at maximum speed for 30 min at 4°C. Immunoprecipitations were carried out by incubating cell lysates with antibodies, as indicated, for 4 hr at 4°C, followed by incubation for an additional 3 hr with protein A-sepharose 4B beads. Then, after washing three times with lysis buffer, immune complexes were resolved using SDS-PAGE. Finally, Western blotting was performed using horseradish peroxidase-conjugated IgG as a secondary antibody and the Western Lightning-ECL system (PerkinElmer Inc., Waltham, MA) for detection. All experiments were conducted at least three independent times.
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9

Protein Co-Immunoprecipitation and Western Blotting

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Proteins were extracted and subjected to co-immunoprecipitation and/or Western blotting as described 10 . Briefly, cells were washed twice with ice-cold PBS and then lysed with 1% Nonidet P-40 lysis buffer (20 mM Tris, pH 8.0, 137 mM NaCl, 1% Nonidet P-40, 10% glycerol, 1 mM Na3VO4, 1 mM phenylmethylsulfonyl fluoride, 10 mg/ml aprotinin, and 20 mg/ml leupeptin), harvested by scraping, and on the ice for 30 min. Cell lysates were collected and clarified by centrifugation for 25 min at 4 °C, and total protein concentration was determined using the Bradford Assay according to the manufacturer's instructions (Sigma-Aldrich, St Louis, MO). Immunoprecipitations were carried out by incubating cell lysates with antibodies as indicated for 12 h at 4 °C, followed by incubation for 4 h with protein A-Sepharose 4B beads. After washing five times with lysis buffer, immune complexes were resolved using SDS-PAGE. Western blotting was proceeded, and then incubated with indicated primary antibodies. The membranes were incubated with horseradish peroxidase-conjugated IgG as a secondary antibody and the Western Lightning ® -ECL system (PerkinElmer Inc., Waltham, MA) for detection.
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