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6 protocols using c myc sc 764

1

Comprehensive Cellular Signaling Pathway Analysis

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Chemicals: Crystal Violet (Sigma), cycloheximde (Sigma), DMSO (Sigma), EdU (Invitrogen), entinostat (Selleckchem), Geneticin (Invitrogen), MG132 (Cayman), Noble Agar (Difco), puromycin (Sigma), trichostatin A (Cayman), tubastatin A (Cayman), tubacin (Selleckchem). Primary Antibodies: pH3Ser10 ab47297 (Abcam), p21/Kip1 610241 RB 554136 (BD), p53BP1ser25 A300-652A (Bethyl), cyclin D1 CC12 (Calbiochem), ac- α-Tubulin #5335, GAPDH #2118, HDAC6 #7612, PARP #9542, Ph-p53Ser15 #9284, pHistone H2A.X Ser139 #2577, pChk2Thr68 #2197, pERK1/2 Thr402/Tyr404 #4370, pRbSer780 #9307, pRbSer807/811#9308 (Cell Signaling Technology), FGFR3 sc-123, c-MYC sc-764, cyclin A sc-751, cyclin B1 sc-752, cyclin D2 sc-754, cyclin E sc-481, cyclin E2 sc-28351, ERK1 sc-94 (Santa Cruz Biotechnology), pATMSer1981 #05-740, ac-Histone H3 #06-599, ac-Histone H4 #06-866 (Upstate).
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2

Protein Lysate Extraction and Antibody Detection

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Protein lysates were extracted as described [38 (link)]. The antibodies: TBX2 (07–318); HP1β (MAB2448), and PARP1 (Ab-2, #AM30-100UG) were obtained from Millipore (Billerica, MA, USA); EGR1 (Cell Signalling, Boston, MA, USA) (#4154) and Santa Cruz Biotechnology (Santa Cruz, CA, USA) (sc110X); C-MYC (sc-764) from Santa Cruz, CA, USA; sheep polyclonal antibody for NDRG1 (Dr James Murray, QUB); KAP1 (Bethyl Laboratories, Montgomery, TX, USA) (BL553); HP1α (#2616), HP1γ (#2619), EZH2 (AC22, #31475) all from Cell Signalling (Boston, MA, USA); Histone H3K9me3 (ab8898), Histone H3K27me3 (ab6002), G9A (ab40542), SUZ12 (ab12073), DNMT3B (ab2851) all from Abcam (Cambridge, UK); mouse polyclonal antibody for FLAG M2 Sigma (Gillingham, Dorset, UK) (F1804); CDK1 (610038) from BD Transduction Laboratories (NJ, USA). GAPDH antibody (#4699–9555) (Biogenesis, Poole, UK) and Vinculin antibody (#13901) (Cell Signalling, Boston, MA, USA) were used to show equal loading of protein. Densitometric values below each lane represent protein expression levels normalised to loading control.
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3

Western Blot Analysis of Protein Targets

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Whole cell protein extracts were resolved on SDS–PAGE and proteins were transferred to nitrocellulose membranes. After blocking for 1 hour at room temperature in 5% milk in PBS/0.1% Tween-20, membranes were incubated overnight at 4°C with the indicated primary antibodies. p-Stat3(Tyr705) (sc-7993-R, rabbit polyclonal antibody, 1:1000 dilution), Stat3 (sc-482, rabbit polyclonal antibody, 1:1000 dilution), AR (441, sc-7305, Mouse monoclonal antibody, 1:1000 dilution) and c-Myc (sc-764, rabbit polyclonal antibody, 1:1000 dilution) were purchased from Santa Cruz Biotechnology, Santa Cruz, CA; Survivin (FL-142, rabbit polyclonal antibody, 1:1000 dilution) and Tubulin (T5168, Monoclonal Anti-α-Tubulin antibody, 1:5000 dilution) were purchased from Sigma-Aldrich, St. Louis, MO. Tubulin was used to monitor the amounts of samples applied. Following secondary antibody incubation, immunoreactive proteins were visualized with an enhanced chemiluminescence detection system (Millipore, Billerica, MA).
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4

Western Blot Analysis of Cell Signaling Proteins

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Cells were harvested and washed twice with PBS. Cell lysis was performed on ice for 25 min, in RIPA buffer (150 mM NaCl, 1% Nonidet P40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulphate, 50 mM Tris-HCl, pH 8.0) containing a protease inhibitory cocktail (Roche). Insoluble material was pelleted by centrifugation at 16,000× g at 4°C for 3 min. Protein concentrations were determined using the Bradford assay (Bio-Rad). Thirty micrograms extract was mixed with 4× Laemmli buffer (40% glycerol, 240 mM Tris/HCl, pH 6.8, 8% SDS, 0.04% bromophenol blue, 5% β-mercaptoethanol), denatured at 96ºC for 5 minutes, separated by SDS-PAGE, and transferred to nitrocellulose membranes (PROTRAN-Whatman, Schleicher&Schuell). The membranes were blocked with 5% non-fat dry milk in TBS-T for 60 min, incubated with primary antibodies overnight at 4°C, washed three times with TBS-T for 10 min, incubated with the peroxidase-conjugated secondary antibody (1:2000; Amersham Biosciences) in TBS-T with 5% non-fat dry milk for 60 min, and washed three times with TBST for 10 min. Immunoreactive proteins were detected using Supersignal West Dura HRP Detection kits (Pierce). The primary antibodies used were: p16Ink4a (Santa Cruz); p19Arf (Ab80 Abcam); p15Ink4b (Santa Cruz); β-catenin (clone 14, BD Biosciences); p53 (sc-6243 Santa Cruz); p21 (BD Pharmigen); c-Myc (sc-764 Santa Cruz); β-actin (ab8226, abcam).
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5

Regulation of Cyclin D1 by miR-6125

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The miR‐6125 precursor overexpression plasmid (HmiR1561‐MR03) and its control plasmid were purchased from Genecopoeia (Guangzhou Science Park, Guangzhou, China). The miR‐6125 micrOFFTM inhibitor (S1127) and its control reagent (U0709) were purchased from RIBOBIO Company (Guangzhou, China). YTHDF2, β‐catenin overexpression plasmid, shGSK3β plasmid and control plasmids were constructed by Miaoling Company (Wuhan, China), and the GFP‐Cyclin D1 plasmid was constructed in the laboratory. Cycloheximide was obtained from Calbiochem (San Diego, CA, USA). Antibodies against Cyclin D1 (2968), c‐Jun (9165), p‐c‐Jun (Ser63) (2361), p‐c‐Jun (Ser73) (3270), SP1 (9389), HA (3724), p‐β‐catenin (Ser33/37Thr41) (9561), GSK3β (12456), Flag (14793) and β‐catenin (8480) were purchased from CST (Boston, MA, USA). Antibodies against GFP (SC‐9996), CDK4 (SC‐260), p21 (SC‐397), p27 (SC‐1641), CDK6 (SC‐7961) and c‐Myc (SC‐764) were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against GAPDH (Ab0037) and β‐Actin (Ab0011) were purchased from Abways Technology (Shanghai, China). Antibodies against YTHDF2 (24744‐1‐AP) were purchased from Proteintech (Wuhan, China).
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6

Antibody Panel for Cellular Profiling

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Antibodies used in this study included IKKα (IMG-136A) from IMAGENEX; Lamin B (sc-6216), cytokeratin 5 (K5, sc-17090), p50 (sc-1109), c-myc (sc-764), and IgG (sc-2025) from Santa Cruz Biotechnology; p65 (8242), c-Rel (12707), and E-cadherin (24E10) from Cell Signaling Technology; Sox2 (245610) from R&D Systems; Twist1 (T-6451) and β-actin (A-5441) from Sigma-Aldrich; TNFR1 (ab111119 and ab19139) and histone H3 (acetyl K27, ab4729) from Abcam; UBCH10 (NBP2-20782) from Novus Biologicals; K5 (PRB-160P) from Babco; α-Tublin (ab4074) and histone H3 (acetyl K27, ab4729) from Abcam.
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