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7 protocols using sm 164

1

Modulation of Cell Death Pathways

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Lipopolysaccharide (LPS) Escherichia coli 011:B4 (10 ng/ml, L4391), 5Z-7-Oxozeaenol (5z7, 125 nM), Necrostatin-1 (Nec-1, 10 uM, N9037) and cycloheximide (CHX, 10ug/ml) were purchased from Sigma. zVAD.fmk was purchased from Millipore (2109007, 50uM). Caspase-3/7 inhibitor I was purchased from Cayman Chemical. Recombinant human and murine TNF (50ng/ml) was purchased from PeproTech. SMAC mimetic SM-164 (1uM) was purchased from ApexBio.
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2

Investigating Inflammatory Pathways in Cells

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Lipopolysaccharide (LPS) (Escherichia coli 0111:B4) was purchased from Sigma and used at 10 ng/ml. zVAD.fmk was purchased from ApexBio and used at 50 μM. Necrostatin-1 was purchased from Sigma and used at 10 μM. SM-164 was purchased from ApexBio and used at 1 μM. Poly(I:C) was from InvivoGen and used at 25 μg/ml. Recombinant mouse IFNβ (12400-1) and recombinant human IFNβ (11415-1) were purchased from PBL Assay Science and used at various concentrations as indicated. In all cases of IFNβ pre-treatment (overnight or 1 h), the IFNβ is washed away before addition of experimental conditions. Recombinant moue TNF was purchased from PeproTech and used at a concentration of 50 ng/ml. Ruxolitinib was purchased from cayman chemical and used at a concentration of 10 μM. Blocking antibody to mouse IFNAR (MAR1-5A3) and control IgG were purchased from BD Pharmingen and used at 20 μg/ml. Blocking antibody to human IFNAR (#21385–1) and control IgG were purchased from PBL and used at a concentration of 20 μg/ml. Recombinant proteins were re-constituted in 0.1% endotoxin free BSA from Akron Biotech (AK8917).
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3

Modulating Cell Death Pathways

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The Smac mimetic AZD5582 was obtained from Chemietek (Indianapolis, IN, USA) and Smac mimetics SM164, BV6, and Birinapant (TL32711) were from APExBIO (Houston, TX, USA). Recombinant human IFNα was from PBL Assay Science (Piscataway, NJ, USA) and IFNγ, IFNλ, TNFα, and Annexin V-FITC were from eBioscience (San Diego, CA, USA). Recombinant human TRAIL was from ProSpec TechnoGene (East Brunswick NJ, USA). Polyinosinic–polycytidylic acid (poly(I:C)) was from InvivoGen (San Diego, CA, USA). Necrostatin-1, necrosulfonamide, GSK872, Bay11-7082, JAK kinase inhibitor I, AG-1478, and cisplatin were from EMD Millipore (Billerica, MA, USA). The general caspase peptide inhibitor Z-VAD-FMK and the caspase-8 peptide inhibitor Z-IETD-FMK were from R & D Systems (Minneapolis, MN, USA). Human TNFα neutralizing antibody (#7321) was from Cell Signaling Technology (Beverly, MA, USA). Caspase-3 and -8 colorimetric assay kits were from BioVision (Milpitas, CA, USA). All other chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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4

Investigating Cell Death Pathways

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The following reagents were used: zVAD-FMK (10 μM, Apex Bio), QVD (10 μM, Apex Bio), SM-164 (100 nM, gift from Shaomeng Wang), GSK’963 (referred as RIPK1i, 100 nM, GlaxoSmithKline), Nec-1 (10 μM Merck), Nec-1s (10 μM Merck), RO-3306 (9 μM, Merck), Thymidine (Sigma), BIM peptide (Kind gift of Tony Letai), FLAG-hTNF (10 ng/ml, Enzo), MG132 (1-20 μM, as indicated per cell line, see below, SIGMA), Recombinant Casp8 (1U Enzo). The following antibodies were used for western blotting: α-RIPK1 (1:1000, BD Biosciences), α-HA (1:1000, Roche), α-PLK1 (1:1000, Bethyl Laboratories), α-PLK1-pT210 (1:2000, AbCam), α-Cyclin B (1:1000, Cell Signaling), α-BUBR1 (1:1000, BD Bioscience), α-BUBR1-pT680 (1:1000, Kind gift of Geert J.P.L Kops), α-BUBR1-pT676 (1:1000, Kind gift of Erich A. Nigg), α-pH-H3 (1:2000, Millipore), α-Casp8 (for WB - post IP, 1:5000, MBL), α-Casp8 - for IP (7.5 μg/ml, C-20, Santa Cruz Biotechnology, α-FADD – for IP (7.5 μg/ml, Santa Cruz), α-FADD (1:1000 BD Biosciences), α-RIPK3 (1:1000 Proscience), α-RIPK3 (1:1000 Novus Biological) α-cFLIP (1:1000, Enzo), α-Myc (1:1000, clone 9E10,SIGMA), α-HSP90 (1:1000 Santa Cruz Biotechnology).
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5

Apoptosis-Inducing Agents and Antagonists

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Drugs used in this study were recombinant murine sTRAIL/Apo2L (Peprotech; NJ, USA), murine TNFα (Peprotech), Debio1143/AT-406 (Selleck Chemicals; Texas, USA), LCL161 (Selleck Chemicals), SM-164 (ApexBio; Texas, USA), Birinapant (ApexBio), BV6 (ApexBio), GDC-0512 (Selleck), doxorubicin (Sigma-Aldrich; MO, USA) and cisplatin (Sigma-Aldrich). The following antibodies were used: anti-cIAP1 (Enzo Life sciences; NY, USA), anti-cIAP2 (R&D systems; MN, USA), anti-XIAP (MBL International; MA, USA), anti-FADD (Abcam; Cambridge, UK), anti-TNFR1 (Abcam), anti-TRAIL-R2 (R&D systems), anti-caspase-3 (BD Biosciences; NJ, USA), anti-caspase-8 (Abcam), anti-RIPK1 (BD Biosciences), anti-RIPK3 (ProSci; CA, USA), anti-MLKL1 (Abcam), anti-phosphoS345-MLKL (Abcam), anti-CYLD (Thermo Fisher Scientific; Massachusetts, USA), anti-crmA (Santa Cruz Biotechnology; Texas, USA), rabbit anti-GFP (polyclonal in-house antibody), goat anti-rabbit FITC (Merck Millipore; MA, USA), rabbit anti-goat-FITC (Thermo Fisher Scientific), mouse anti-GAPDH (Merck Millipore), donkey anti-rabbit HRP conjugated antibody (GE Healthcare Life Sciences; NJ, USA), goat anti-rat HRP conjugated antibody (GE Healthcare Life Sciences), and rabbit anti-mouse-HRP conjugated antibody (Sigma).
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6

ATP Quantification in Treated Cells

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The amount of ATP in treated cells was determined using CellTiter-Glo 2.0 kit (Promega;WI, USA). Two thousand cells per well were seeded in 96-well white plates and were treated with 1 ng/mL of murine TNF-α (Peprotech; NJ, USA), 10 µM of SM-164 (ApexBio; Texas, USA), 10 µM of QVD (R&D systems), 10 µM of Necrostatin-1 (Sigma-Aldrich) or milk-derived EVs (100 µg/mL). After 48 h, 75 μL of CellTiter-Glo was added to each well and the plates were incubated at room temperature for 10 min. Luminescence was recorded using a Spectromax M5 (Molecular Devices; CA, USA).
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7

Cytokine-Induced Apoptosis and Necroptosis

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TNFα and TRAIL cytokines were purchased from Peprotech (Rocky Hill, NJ). Antibodies against cleaved caspase-3, phospho-inhibitor of NFκB (pIκB), p50, p65, Lamin B and FADD were purchased from Cell Signaling Technology, Inc. (Danvers, MA). Pan-caspase inhibitor (Z-VAD-FMK) was purchased from Enzo Life Sciences (New York, NY). Ripa lysis buffer was purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Necrostatin-1, PS-1145 and actin antibody were purchased from Sigma Aldrich (St. Louis, MO). SM-164 was purchased from ApexBIO (Houston, TX). Fetal bovine serum (FBS) was purchased from Atlanta Biologicals (Lawrenceville, GA). Dulbecco's modified eagle medium (DMEM) cell culture medium and cell culture supplements were purchased from Invitrogen (Carlsbad, CA).
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