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5 protocols using sc 1207

1

Immunoblotting and Immunoprecipitation Protocols

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Immunoblots were performed as previously described [5 (link)]. Antibodies against p16 (1:200 dilution; #sc-1207), ALDH2 (1:200 dilution; #sc-100496) and acetylated FoxO1 (1:200 dilution; #sc-49437) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against p53 (1:1000 dilution; #2524), LC3B (1:1000 dilution; #3868), SirT1 (1:1000 dilution; #3931), acetyl-lysine (1:1000 dilution; #9441), Atg7 (1:1000 dilution; #8558), Rab7 (1:1000 dilution; #9367) and FoxO1 (1:1000 dilution; #2880) were purchased from Cell Signaling Technology. Antibody against DNPH (1:2000 dilution; #ab93160), LAMP2 (1:1000 dilution; #ab25339), Tubulin (1:1000 dilution; #ab179513), GAPDH (1:10000 dilution; #ab181602) and TBP (1:5000 dilution; #ab28175) were purchased from Abcam. Antibody binding was detected via enhanced chemiluminescence (Millipore) and scanned with ChemiDocXRS (Bio-Rad Laboratory, Hercules, CA). Immunoblot band intensity was analyzed with Lab Image software. For immunoprecipitation analysis, lystes were mixed with primary antibody. Immunocomplexes were separated by SDS-PAGE and detected with western blot analyses.
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2

Immunohistochemical Profiling of Prostate Cancer

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The primary antibodies used and their subsequent dilutions were: anti-P16 (rabbit, 1:1000, SC-1207, Santa Cruz), anti-human AR (mouse, 1:250, sc-7305, Santa Cruz Biotechnology), anti-CK5 (rabbit, 2400, PRB-160P, Covance), anti-CK8 (mouse, 1:2000, MMS-162P, Covance), anti-p63 (mouse, 1:2000, sc-8431, Santa Cruz), anti Ki67 (mouse, 1:1000, NCL-ki67, Novacastra), anti-E-cadherin (mouse, 1:200, Cat. No. c20820, BD Transduction Laboratoriesc, Sparks, MD, United States), anti-mouse/ human androgen receptor (rabbit, 1:250, sc-816, Santa Cruz), anti-synaptophysin (rabbit, 1:100, Cat. No. 18–0130, Invitrogen), anti-SPP1 (rabbit, 1:200, Cat. No. 91655, Abcam, Cambridge, MA, USA), CD44 (Rat, 1:50, sc-18849, Santa Cruz) and anti-Vimentin (Chicken, 1:2000, Cat. No. 919101, Biolegend). The biotinylated anti-rabbit or anti-mouse secondary antibody (BA-1000 or BA-9200, Vector Laboratories), or anti-rabbit or anti-mouse conjugated to AlexaFluor488 or to AlexaFluor594 (Molecular Probes) secondary antibody that were used for IHC or IF staining, respectively.
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3

Immunohistochemical Analysis of Cell Markers

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Staining and image capture were performed on 3μm formalin-fixed and paraffin-embedded sections as described(15 (link),20 (link)). Primary antibodies used included mouse monoclonal antibodies against hemagglutinin tag (HA, MMS-101P, Covance, 1:500), p21 (cat#sc-6246 Santa Cruz, 1:200), gamma-H2AX (cat#05-636 Millipore, 1:500), and pATM (cat#200-301-500 Rockland, 1:200), as well as rabbit polyclonal antibodies against cleaved caspase 3 (CC3, cat#9661S Cell Signaling Technology, 1:200), Ki67 (cat#NCL-Ki67P Novocastra, 1:200), phospho-histone 3 (pH3, cat#06-570 Millipore, 1:200), macroH2A (cat#ab37264 Abcam, 1:150), p16 (cat#sc-1207 Santa Cruz, 1:200), and p53 (cat#NCL-p53-CM5p Novacastra, 1:1000). Cell counting was achieved using Image J software as well as Adobe Photoshop.
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4

Protein Expression and Immunoblotting Protocol

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Cells were lysed in RIPA buffer (50 mM Tris-HCl pH 8.0, 150 mM sodium chloride, 1% (v/v) NP-40, 0.5% (w/v) sodium deoxycholate, 0.1% (w/v) SDS, 5mM sodium fluoride, 1 mM sodium orthovanadate, 1 mM PMSF, 1:100 Protease Inhibitor Cocktail (Sigma-Aldrich)) for protein extraction. Proteins were run on 8–12% acrylamide gels, transferred to nitrocellulose membranes and visualized by immunoblotting with the following antibodies anti-ß-ACTIN (1:2000, A2228, Sigma-Aldrich), anti-H-RAS (1:1000, sc-520, Santa Cruz Biotechnology Inc.), anti-MYC (1:1000, AB32072, Epitomics (Abcam)), anti-p16 (1:1000, sc-1207, Santa Cruz Biotechnology Inc.), anti-p19 (1:1000, sc-32748, Santa Cruz Biotechnology Inc.), anti-p53 (1:500, NCL-p53-CM5p, Novocastra), anti-PTEN (1:1000, sc-7974, Santa Cruz Biotechnology Inc.), anti-TSC2 (1:1000, 3990s, Cell signaling) and anti-VINCULIN (1:5000, ab129002, Abcam).
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5

Immunohistochemical Analysis of Cell Markers

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Immunohistochemical analysis was performed on paraffin embedded sections by indirect immunohistochemistry procedure using rabbit anti-p16 (sc-1207, Santa Cruz Biotechnology, Dallas, TX, USA), anti-p21 (ab109199, Abcam plc, Cambridge, UK), anti-HA (3724, Cell Signaling Technology, Beverly, MA, USA), anti-CD34 (ab81289, abcam), goat anti-collagen IV (1340-01, SouthernBiotech, Birmingham, AL, USA) and sheep anti-nephrin (AF4269, R&D Systems, Minneapolis, MN, USA) antibodies. For p16, p21 and collagen IV immunostaining, sections were pretreated by proteinase K (19131, QIAGEN K.K., Tokyo, Japan). For the other antigens, sections were pretreated by citrate buffer (pH 6.0). Following the first antibody, sections were incubated with Alexa Fluor 488 or 594-conjugated donkey anti-rabbit antibody (A21206, A21207,
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