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Accumax is a laboratory instrument designed for the dissociation and disaggregation of cell samples. It utilizes a proprietary enzymatic formulation to efficiently break down the extracellular matrix and cell-cell adhesions, enabling the isolation of individual cells from a heterogeneous sample.

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164 protocols using accumax

1

Evaluation of Protein Aggregation

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Samples were stained with aggresome and aggregation of unfolded protein was evaluated by fluorescence microscope and flow cytometry according to the manufacturer’s protocol. For fluorescence microscope analysis, samples were incubated with aggresome reagent (1:2000; Enzo Life Science Inc., Farmingdale, NY, USA) for 60 minutes and slides were examined with a fluorescence microscope (DM 2500). For flow cytometry, cells were washed twice with phosphate buffered saline (PBS) and incubated with AccumaxTM (Innovative Cell Technologies, San Diego, CA, USA) for 10 minutes at 37 °C. Cells were recovered in fluorescence activated cell sorting (FACS) buffer composed of DMEM without Phenol Red (Nacalai Tesque) + 2%FBS, passed through a BD Falcon™ 70 μm cell strainer (BD Biosciences, Franklin Lakes, New Jersey, USA), and resuspended in FACS buffer. The cells were then incubated with aggresome reagent (1:2000) for 60 minutes at room, temperature, and washed three times with PBS. The cells were resuspended in FACS buffer and analyzed by flow cytometry using CellQuest Pro software (BD Biosciences).
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2

Establishing 5-FU Resistant Colorectal Cancer Model

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Four-week-old male athymic NOD/SCID mice were used to establish chemotherapy-resistance model. The mice were subcutaneously injected with SW620 cells (2×106 cells in 200 μL volume). After 14 days of inoculation, 5-FU by IP injection at 30mg/kg/mouse was applied thrice a week for four weeks. After four weeks, the mice were sacrificed and tumors were collected and digested into primary cells, SW620R. To obtain 5-Fu resistant cell line, tumor cells were isolated and purified by using ACCUMAXTM (Innovative Cell Technologies) according to manufacturer's instructions. In brief, the tumor tissues were rinsed with sterile DPBS twice, and transferred to a petri dish containing sterile DPBS. The tissues were cut by surgical scissors into small pieces approximately 1 mm in size, then transferred to 50 ml sterile centrifuge tube. The pieces were settled by centrifugation and carefully removed the supernatant for two times. The pieces were transferred to new 50 ml sterile centrifuge tube and treated with ACCUMAXTM, and then incubated on an agitator at RT for 30 minutes. After the incubation, the cells were isolated by cell strainers, then removed the supernatant by centrifugation at 900 rpm for 5 minutes. The cells were resuspended in DPBS and centrifuged for washing two times. After washing, the primary cells (SW620R) were cultured in RPMI1640 medium containing 5-FU (concentration 1 μM).
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3

Annexin V-Based Apoptosis Evaluation

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Cell apoptosis was evaluated with Annexin V (Medical & Biological Laboratories Co., Ltd.) staining. For fluorescence microscopy analysis, the cells were incubated with DMEM supplemented with Annexin V for 30 minutes, followed by fixation with 4% paraformaldehyde for 10 minutes. The slides were examined with a fluorescence microscope (DM 2500; Leica Microsystems). For flow cytometry, cells were incubated with DMEM supplemented with Annexin V for 15 minutes, and harvested by digestion with AccumaxTM (Innovative Cell Technologies). Recovered cells were then analyzed by flow cytometry using CellQuest Pro software (BD Biosciences).
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4

Dissociation and Culture of Mouse Cortical Neurons

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Cortices were dissected from WT and Cul3+/ mouse embryonic brains at E17.5. Cortex from each brain was cultured individually. Dissociation was initiated by incubating the dissected cortices in 1ml of Accumax (Innovative Cell Technologies Inc) for 30 min at 37°C followed by 5 min incubation in 10 mg/ml DNaseI (Sigma Aldrich), the dissociated cells were gently triturated with fire-polished glass Pasteur pipette to make single cell suspension, and then passed through 40-micron nylon filter to remove any non-dissociated tissue. Cells were counted with cell counter (BioRad) and 1×105 cells were seeded onto glass coverslip coated with 0.01 % P-L-ornithine and 5ug/mL mouse natural laminin in 24-well plates. The plating media contained Neurobasal medium, 2% B27 supplement, 10% horse serum, 1% penicillin/streptomycin, and 2 mM L-glutamine (Invitrogen). After 12 hr, media was changed to serum-free feeding media containing Neurobasal medium, 2% B27 supplement, 1% penicillin/streptomycin, and 2 mM L-glutamine. At DIV2–4, cultures were treated with 1mM Cytosine b-D-arabinofuranoside hydrochloride (Ara-C) (Sigma Aldrich) to inhibit glial cell proliferation. The cells media were half replaced with new media containing AraC every four days. Cultures were maintained at 37°C and 5% CO2. All media components were from GIBCO unless otherwise specified.
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5

Neuronal Cell Culture Optimization

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Once differentiated, cells were detached using Accumax (Innovative Cell Technologies) supplemented with 5% trehalose dihydrate (Sigma-Aldrich), 1U Papain (Worthington), 10 μM Y27632 (Tocris), 8 mM kynurenic acid (Sigma-Aldrich). Cells were plated using Tecan Fluent automation workstation into 384- or 96-well CellCarrier Ultra imaging plates (PerkinElmer) coated with 50 μg/ml poly-D-lysine (Sigma-Aldrich) and 20 μg/ml recombinant human laminin (Sigma-Aldrich) in Neuron Differentiation Media supplemented with 10 μM Y276342 Rock Inhibitor (Tocris), and 1X RevitaCell (Gibco).
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6

Granulosa Cell Apoptosis and Cell-free DNA in Follicular Fluid

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Follicle contents were aspirated from 30 randomly selected follicles (3‐6 mm in diameter) of ovaries of each gilt (N = 16) and centrifuged to separate FF and granulosa cells (200 g for 3 minutes) (Figure 2). The FF was further centrifuged at 3000 g for 10 minutes, and DNA was extracted from this FF (as described in 2.3) to determine copy numbers of cf‐N‐ and cf‐Mt‐DNA contents. Granulosa cells were washed three times and dispersed using disperse solution (Accumax, Innovative cell technologies) and stained with propidium iodide, Hoechst 33342, and Annexin V (Thermo Fisher). Two hundred cells from each sample were evaluated under a fluorescent microscope (LAS AF with Leica DMI 6000B, Wetzlar). The rate of dead cells (PI and Hoechst positive) and apoptotic cells (Annexin V and Hoechst positive but PI negative) was determined for each gilt. Correlations between the characteristics of the granulosa cells and cfDNA content in FF were examined among the 16 gilts.
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7

Quantifying DPP4 Expression in Airway Cells

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To quantify cellular DPP4 abundance, human airway epithelial cultures and Calu-3 cells were rinsed apically with sterile PBS, then lysates were prepared by resuspending cells in buffer containing 1% NP-40 (100 μl lysis buffer per Transwell culture). Lysates were spun in a tabletop centrifuge for 5 min at 1000 rpm to pellet cell debris, and DPP4 protein abundance in the supernatants was measured using the human DPP4IV/CD26 Duoset ELISA kit (R&D Systems, cat#DY1180) following the manufacturer's protocol.
To identify the cell types expressing DPP4, airway epithelia were detached from Transwell inserts by incubation with Accumax (Innovative Cell Technologies), then resuspended and washed in ice cold wash buffer (PBS with 2% FBS). Next, cells were fixed and permeabilized using a fixation/permeabilization solution from the Cytofix/Cytoperm kit (BD Bioscience, cat#554714). After blocking with SuperBlock™ buffer (ThermoFisher Scientific, cat#37515), cells were incubated with anti-DPP4 antibody (1:50) (R and D Systems, cat#AF1180) for 1 h followed by Alexa Fluor488 (ThermoFisher Scientific). Cells were analyzed using a BD Accuri C6 flow cytometer (BD Biosciences).
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8

GC Enumeration via Trypan Blue

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After IVG, GCs were enzymatically dispersed in Accumax (Innovative Cell Technologies, San Diego, CA, USA) and stained with trypan blue. The total number of GCs was calculated based on the
volume and concentration of the cellular suspension using a hematocytometer. Live and dead cells were calorimetrically determined; white, live and blue, dead cells.
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9

Single-Cell RNA Sequencing Protocol

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LC2ad were dissociated to single cells by Accumax treatment (Innovative Cell Technologies). We employed the C1 single-cell auto prep system (Fluidigm) and SMART-Seq v4 Ultra Low Input RNA Kit with oligo DNA, identically to Smart-Seq2. We executed the C1 protocol ‘SMART-Seq v4 Rev B’. We acquired approximately 1 ng of FL-cDNA. As a control, we also conducted cDNA synthesis from bulk cells using a general thermal cycler with the same reaction conditions. Using SeqAmp DNA Polymerase (TAKARA Bio), we conducted a further amplification (1 cycle of 1 min at 96 °C, 5 cycles of 30 s at 95 °C, 65 °C for 30 s, 7 min at 68 °C, 1 cycle of 10 min at 72 °C). We purified the re-amplified cDNA using Agencourt AMPureXP (Beckman Coulter). Approximately 300 ng of FL-cDNA was obtained.
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10

Cell Line Maintenance and Characterization

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Cell lines were obtained from American Type Culture Collection or a gift from S. Lindquist. PC3M, NCI-H838, SKBR3, BT-20, ZR-75-1, HCC38, LNCaP, VCaP, and DLD1 cells were maintained in RPMI 1640 (Gibco, #11875119), 10% fetal bovine serum (Clontech, #631106), and 1% penicillin/streptomycin (pen/strep; Gibco, #15140122). MDA-MB-231, MCF7, MEFs, and 293T cells were maintained in Dulbecco’s modified Eagle’s medium (Gibco, #11995073), 10% fetal bovine serum, and 1% pen/strep. Cell lines were authenticated at the University of Arizona Genetics Core and tested negative for mycoplasma. Cells were lifted for passaging with Accumax (Innovative Cell Technologies, #AM105). Cells were maintained at 37°C and 5% CO2 in a HeraCell Vios 160i incubator (Thermo Fisher Scientific).
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