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16 protocols using femtotip 2

1

Microinjection of Blue Fluorescent Protein

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The blue fluorescent protein (BFP, Wako, Osaka) injection solution was centrifuged at 11,000 × g for 15 min at 4 °C and a 1 µl aliquot was loaded into the tip of a Femtotip II microinjection needle (pore size: 0.5 µm, Eppendorf, Germany). Next, the needle was tightly mounted in the capillary holder of a microinjector CellTram vario, and then fixed onto the micromanipulator.
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2

Folate-induced Chemotaxis Assay

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Undifferentiated Ax2 and erkB- amoebae were harvested from K. aerogenes clearing plates and washed six times in KK2-MC to remove bacteria. Cells were resuspended at 2x107 cells/ml and shaken in suspension for 30 minutes before being washed again then diluted in KK2-MC and placed in a modified 2-well chambered coverglass (Nunc Lab-tek) with cut-down sides. Cells were left to settle for 30 minutes before filming using a Zeiss Axiovert S100 inverted microscope with 20x phase contrast objective. A micropipette (Eppendorf Femtotip II) filled with 100 μM folate was placed in the centre of the field of view just above the plane of the coverglass using a micromanipulator (Eppendorf Injectman and Femtojet). Cell movement was imaged at 2 frames per minute for a 40 minutes period. Cells were tracked using the manual tracking plugin of FIJI ImageJ (https://fiji.sc/) and chemotaxis parameters extracted using the Ibidi chemotaxis tool software (Ibidi).
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3

Generating Transgenic and Mutant Zebrafish

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Zebrafish embryos were microinjected at one-cell stage using the FemtoJet 4i (Eppendorf, Hamburg, Germany) microinjector together with Femtotip II (Eppendorf, Germany) microcapillaries. The composition of the injection mixture depended on the experimental approach. In case of generating transgenic TMEM43 zebrafish lines, the injection mixture consisted of 25 ng/µL tol2 transposase mRNA, 25 ng/µL Tol2 expression construct, 0.05% Phenol Red (pH 7.0; Carl-Roth, Karlsruhe, Germany) and 1 mg/µL FITC Dextran (Sigma-Aldrich). At 3 dpf, injected embryos were inspected under fluorescence stereomicroscope and screened for GFP-positive cells in the heart. In case of generating tmem43 mutant lines, the injection mixture consisted of 100 ng/µl Cas9 mRNA, 25 ng/µL tmem43 exon2 sgRNA, 0.05% Phenol Red and 1 mg/µL FITC Dextran. At 24 hpf, injected embryos were analyzed under stereomicroscope for proper development and only healthy embryos were screened for target site mutations. DNA was extracted from 10 single embryos and sequenced for identification of CRISPR/Cas9 induced indel mutations.
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4

Nanoparticle Dynamics in Nucleus

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MCF10A nuclei were microinjected with polyethylene glycol (PEG) modified 100 nm red fluorescent Carboxylate-Modified nanoparticles (Invitrogen). We followed established protocols to coat Carboxylate-Modified nanoparticles (Invitrogen) with amine-terminated PEG (42 (link),43 (link)). 10 μl PEGylated particles (3.6×1010 particles/ml) were sonicated for 30mins before loaded to Femtotip II (0.5 μm, Eppendorf). The particles were then microinjected into the nuclei using an Eppendorf InjetMan microjection system. Cells were incubated at least 6 hrs. before imaging. Time lapse images of fluctuating particles embedded in the nucleus were acquired on a Nikon TE2000 inverted epifluorescent microscope with 60x/1.49 NA oil immersion objective (Nikon) and CCD camera (CoolSNAP, HQ; Photometrics). Cells were maintained at 37ºC in 5% CO2. Tracking of particles was achieved by using TrackMate plugin of ImageJ (44 (link)). The trajectories of the particles were then used to calculate time-averaged mean squared displacements using @msdanalyzer Matlab tool (45 (link)).
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5

CRISPR Cas9 Microinjection Protocol

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We used commercial Cas9 mRNA (Thermo, USA) and custom synthesized gRNAs. The microinjection procedure was conducted with a microscope (Eclipse TE2000; Nikon, Tokyo, Japan) and micromanipulator (Narishige, Tokyo, Japan) with holding and injection pipettes. We used Femtotip II (Eppendorf, Hamburg, Germany) as an injection pipette. The concentrations of Cas9 RNA and each gRNA were 20 ng/μL and 10 ng/μL, respectively, following a previous report [23 (link)]. RNA was injected into fertilized eggs at 2 hours after IVF.
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6

Zebrafish Model of Tumor Metastasis

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Experiments were performed using the Casper zebrafish stain (ZIRC, Oregon, USA). Adult fish aged 6 months to 2 years were crossed to produce embryos. Embryos were cultured in E3 medium (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33 mM MgSO4) at 28 °C. Dechorionated 2-day post fertilization (dpf) zebrafish embryos were anaesthetized with 0.003% tricaine (Sigma-Aldrich) and positioned in 3% methylcellulose on a dish coated with 1% agarose. Cancer cells expressing the tdTomato protein, either wild type or ANXA2 deficient, were treated with versene solution and resuspended in PBS containing 1% phenol red at the density of 4 × 107 cells per mL. The cell suspension was loaded into borosilicate glass capillary needles (Femtotip II, Eppendorf, Hamburg, Germany) and injections were performed using a pump (Femtojet 4i; Eppendorf) and micromanipulator (Phymep, Paris, France). Around 500 cells/embryos were injected above the duct of cuvier in perivitelline space of the embryo. After checking the implantation with mammalian cells, zebrafish embryos were maintained at 35.5 °C. Tumor imaging is done at 3-, 28- and 52-h post injection (hpi).
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7

Micromanipulation of Cell Nuclei

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The nuclei were manipulated with a micromanipulator (Eppendorf InjectMan, Eppendorf, Hauppauge, NY) mounted with a micropipette with a tip diameter of 0.5 μm (Femtotip II, Eppendorf). For aspiration, the micropipette tip was inserted inside the nucleus and a suction pressure of 20 kPa was applied. Compressive pressure on the top of nucleus was created by lowering the micropipette tip to gently touch the top of nucleus for approximately 200 ms.
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8

Lipophilic Tracer Labeling of Mouse Embryos

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As previously reported (Sepulveda-Rincon et al. 2016 (link)), the lipophilic tracer CM-DiI (Chloromethyl DiI, Molecular probes) was dissolved in olive oil at a final concentration of 2 mg/mL. Prior to labelling, the FemtoTip II (Eppendorf, Hamburg, Germany) was backfilled with the dye. Mouse embryos at 2-cell stage were placed in HEPES buffered medium at 37°C during the micromanipulation. The injections were performed on an inverted microscope (Leica DMI3000 B) using Eppendorf TransferMan NK 2 micromanipulators with a coupled Eppendorf FemtoJet microinjector. The micropipette was pushed through the zona pellucida and pressed against one of the blastomere membranes, and then a microdrop (≈5 pL) was deposited.
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9

Ago2 Knockdown via siRNA Microinjection

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All small interfering RNAs (siRNAs) were purchased from GenePharma. Ago2-siRNAs was designed to specifically target Ago2 and on the basis of 30%-52% GC content and avoiding of internal repeats (5′–3′). Ago2-siRNA1: GCAAAGAUCGCAUCUUUAATT; Ago2-siRNA2: GCCAGUGAUCGAGUUUGUUTT; Ago2-siRNA3: GCAGAAACACACCUACCUUTT; the scrambled siRNA used as negative control. All siRNAs were modified with 2′Fluoro rU/C to increase their annealing temperature. The prediction of off-target effects was described in result. To perform microinjection, zygote-stage embryos were placed in 150 µg/mL hyaluronidase (Sigma) to digest the outer granule cells. SiRNAs was centrifuged at 12,000 rpm for 10 minutes at 4 °C and placed at 4 °C for use. Then, siRNA microinjection was carried out with an Eppendorf FemtoJet microinjector and Narishige NT-88NE micromanipulators. For injection, a glass capillary Femtotip II (Eppendorf) was loaded with 2 μL of 10 µM siRNA by a microloader (Eppendorf), and the solution was injected into the cytoplasm in a 100 μL drop of M2 medium (Sigma) plus 5 μg/mL cytochalasin B (Sigma). The injection volume was approximately 2–5 pL. The injection conditions consisted of 250 hPa injection pressure, 60 hPa compensation pressure and 0.7 s injection time. Immediately after microinjection, embryos were cultured in KSOM medium at 37 °C in 5% CO2.
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10

Transgenerational Effects of Sperm RNA

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Sperm RNA from 4 HC and 4 EE animals was isolated as described above. RNAs were pooled and set at 0.5 ng/μL in 250 μL 0.1 mM EDTA, 5 mM (pH 7.4) based on a previous publication reporting significant effects at this concentration (Gapp et al., 2014 (link)). 3- to 4-week-old C57BL/6JRj females were super-ovulated with pregnant male serum gonadotropin (7.5 U, Intervet) and human chorionic gonadotropin (7.5 U, Intervet) and mated with C57BL/6JRj males. Donor females were sacrificed by cervical dislocation on the day of plug, and fertilized eggs were collected. RNA was injected into the cytoplasm of zygotes at the pronuclear stage using an Eppendorf Femtojet and Femtotip II capillaries with constant flow under visual control on an inverted microscope using a 40× air objective and differential interference contrast (DIC) optics. Injected zygotes were transferred into the oviduct of pseudo-pregnant NMRI fosters bilaterally. The offspring generated from these injections was allowed to grow in a standard cage until 3 month of age before behavioral testing.
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