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158 protocols using ab8978

1

Western Blot Analysis of Protein Interactors

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Cell lysates or immunoprecipitated products were separated by 10% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. Membranes were blocked with 5% nonfat milk in Tris-buffered saline containing 0.1% Tween 20 (TBST) and incubated with primary antibodies overnight at 4°C. Blots were washed and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies for 1 h at room temperature. Finally, blots were washed and visualized with ECL substrate (Pierce). Antibodies and dilutions were rabbit anti-HA (hemagglutinin)-tag monoclonal antibody (MAb) (C29F4) at 1:1,000 (Cell Signaling; 3724S), mouse anti-FLAG M2 antibody at 1:1,000 (Sigma-Aldrich; F1804), mouse anti-FUS MAb (4H11) at 1:200 (Santa Cruz; sc-47711), rabbit anti-CDK2 MAb (78B2) at 1:1,000 (Cell Signaling; S2546P), rabbit anti-DDX5 at 1:2,000 (Abcam; ab21696), and mouse antivimentin at 1:2,000 (Abcam; ab8978). Secondary antibodies were anti-mouse IgG (Santa Cruz; SC-2031) and anti-rabbit IgG (Pierce), both at 1:2,000.
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2

Immunofluorescence Staining of AVICs

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To determine the phenotype of AVICs and verify the effect of metformin on the expression levels of p-AKT and osteopontin (OPN), we performed IF staining experiments. AVICs were seeded in 4-well chamber slides and cultured with normal medium, PM with or without metformin, AICAR, CC, and MK2206 for 72 h. After being fixed with 4% PFA for 15 min, AVICs were permeabilized with 0.1% Triton in PBS and blocked with 5% BSA. AVICs were incubated with the following primary antibodies: α-SMA (ab5694, Abcam, UK, 1:300), vimentin (ab8978, Abcam, UK, 1:500), p-AKT (4060, Cell Signaling Technology, 1:100), and osteopontin (ab8448, Abcam, UK, 1:500) at 4 °C overnight. After washing with PBS, AVICs were incubated with the corresponding fluorescent secondary antibodies at 37 °C for 1 h; 4′,6-diamidino-2-phenylindole (DAPI) was used to counterstain the nucleus. The IF staining images were obtained using a laser scanning confocal microscope (SP8, Leica, Germany).
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3

Protein Expression Analysis in Prostate Cancer

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Total protein was extracted from DU145 and PC3 cells using RIPA Lysis Buffer (YESEN, Shanghai, China, 20101ES60) and protein concentration was determined using the BCA Protein Assay Kit (CST, Boston, MA, USA, no. 7780). Twenty‐five micrograms of proteins was separated by 10% SDS/PAGE and then transferred to a poly(vinylidene difluoride) membrane (Millipore, Billerica, MA, USA, IPVH00010). Then, the membrane was blocked in 5% non‐fat milk for 1 h at room temperature and then incubated with the primary antibody overnight at 4 °C. The primary antibodies used were: anti‐PCNA (Abcam, ab29), anti‐histone H3 (phospho S10) (Abcam, Cambridge, UK, ab14955), anti‐E‐cadherin (Abcam, ab1416), anti‐N‐cadherin (Abcam, ab18203), anti‐vimentin (Abcam, ab8978) and anti‐glyceraldehyde 3‐phosphate dehydrogenase (GAPDH) (Abcam, ab8245). After washing three times with PBST (PBS, Tween‐20, pH7.4), the blots were incubated with secondary antibodies (Abcam, ab6721 and ab6728) at room temperature for 1 h. The poly(vinylidene difluoride) membrane was visualized by ECL assay (KeyGen, Nanjing, Jiangsu, China, KGP1128).
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4

Protein Expression Analysis by Western Blot

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The protein concentration of samples was detected by the BCA kit (Auragene, Changsha, P.R. China). Proteins were separated by SDS-PAGE and transferred onto polyvinylidene fluoride (PVDF) membranes (Invitrogen). PVDF membranes were blocked with 5% dry milk-TBST for 30 min at 37°C. The blots were then incubated with an antibody [anti-Btbd7 antibody (sc-241937; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-E-cadherin antibody (ab15148; Abcam, Cambridge, MA, USA), anti-N-cadherin antibody (ab12221; Abcam), anti-vimentin antibody (ab8978; Abcam), anti-CD45 antibody (ab10558; Abcam), anti-CD44 antibody (ab157107; Abcam), CD133 polyclonal antibody (18470-1-AP; Proteintech, Chicago, IL, USA), OCT4 polyclonal antibody (11263-1-AP; Proteintech), SOX2 polyclonal antibody (11064-1-AP; Proteintech), anti-ALDH1A1 antibody (ab52492; Abcam), and anti-Nanog antibody (ab109250, Abcam)] overnight at 4°C. Following three washes, the membranes were then incubated with a secondary antibody for 40 min at 37°C in TBST. Signals were visualized by ECL chemiluminescence detection kit (Auragene).
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5

Immunofluorescence Staining for Cell Cytoskeleton

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Cells were cultured on the glass slide, which were then rinsed with PBS for three times and fixed with the 4% paraformaldehyde. Next, cells were treated with 0.5% Triton X-100 (Beyotime, China) to increase the permeability of cells. After that, cells were blocked with BSA (Beyotime, China) for 2 hours and incubated with the primary antibodies at 4°C overnight. Vimentin (Abcam, ab8978), α-SMA (Abcam, ab5831) and β-catenin (Abcam, ab223075) were applied. Followingly, cells were incubated with the secondary antibodies including Goat polyclonal Secondary Antibody to Rabbit IgG (Abcam, ab150077) and Goat Anti-Mouse IgG (Abcam, ab205719) in dark room for 2 hours. Finally, cell nucleus of was stained with the DAPI (Invitrogen, USA) and the fluorescence was observed using the laser scanning confocal microscope (Olympus, Japan).
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6

Immunofluorescence analysis of cellular markers

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Anti-polymorphonuclear leukocyte (PMN) antibody (1:1200, 20R-PR020) was from Fitzgerald (Acton, MA, USA). Anti-CD68 (1:200, ab31630), anti-alpha smooth muscle actin (αSMA, 1:200, ab184675), anti-p63 (1:200, ab124762), anti-Ki67 (1:400, ab16667), anti-β-III tubulin (1:200, ab52623) and anti-vimentin (1:200, ab8978) antibodies were from Abcam (Cambridge, UK). Anti-laminin 5 antibody (1:200, sc-13587) was from Santa Cruz (Dallas, TX, USA). Anti-AQP5 antibody (1:100, A9927) was from Abclonal (Wuhan, China). Alexa Fluor 594-conjugated IgG (1:300, A11058, A21207) and Alexa Fluor 488-conjugated IgG (1:300 A11055, A21206) antibodies were from Life Technologies (Carlsbad, CA, USA). DAPI was from Vector (San Francisco, CA, USA).
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7

Immunofluorescence Analysis of JIMT-1 Cells

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JIMT-1 cells were plated on poly-L-lysine-coated glass slides and treated with 50 nM compound or 0.0005 % DMSO as control for 72 h. After fixation in 3.7 % paraformaldehyde (in PBS) for 15 min and subsequent washing in PBS, the cells were permeabilized with PBS containing 1 % Tween 20 and 1 % bovine serum albumin in a single step. The cells were incubated with primary antibody against vimentin (1:100), β-catenin (1:500) or E-cadherin (1:100) for 1 h at room temperature. Antibodies against vimentin (ab8978) and E-cadherin (ab1416) were purchased from Abcam. Antibody against β-catenin (610154) was purchased from BD Biosciences. After washing, the cells were incubated for 1 h with the Alexa Fluor 488 goat anti mouse (1:300) antibody (Invitrogen). Slides were counter-stained with bisbenzimide (Hoechst 33258) (1 μg/ml in PBS) for 2 min and finally washed with PBS before mounting. The cells were viewed in an Olympus/Nikon epifluorescence microscope (Olympus Optical Co. Ltd.) and photos were taken with a digital camera (Nikon Imaging Japan Inc.). Each slide was photographed at randomly chosen areas (at least 8 areas).
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8

Western Blot Analysis of EMT Markers

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NFs, CAFs and GC cells (AGS and SGC-7901) were harvested and lysed by the RIPA (containing 1% PMSF) lysis solution (Beyotime, Shanghai, China), followed by the total protein extraction with centrifugation (14000 rpm for 30 min). The BCA protein concentration kit (Beyotime, Shanghai, China) was applied for protein concentration quantification. Then, the proteins were isolated via SDS-PAGE and transferred to PVDF membranes at a constant current of 200 mA for 90 min. After being sealed with 5% skim milk solution for 2 hours, the PVDF membranes were incubated with primary antibodies of anti-E-cadherin (Abcam, ab1416, 1:1000) and anti-Vimentin (Abcam, ab8978, 1:1000) overnight at 4°C. Subsequently, the membranes were flushed with TBST three times (15 min each time) and maintained with the secondary antibodies at room temperature (RT) for 2 hours. After cleaning with TBST again, the protein bands were exposed using an ECL solution (Beijing Xinjingke Biotechnologies Co., Ltd, China). The densitometry analysis was performed using Image J 3.0 (IBM, USA), and GAPDH served as a control.
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9

Scoparone Alleviates Cardiac Fibrosis

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Scoparone (E‐0358) was purchased from Tauto (Shanghai, China). Ang II (A9525) was purchased from Sigma‐Aldrich (St. Louis, MO, USA), Alzet osmotic minipump (model 2004) was purchased from DURECT (California, USA), tail‐cuff instrument was purchased from IITC Inc (Woodland Hills, California, USA), and the ultrasound imaging system(Vevo2100) was purchased from VisualSonics (Toronto, Canada). Antibodies against 4HNE (ab46545), RAC1‐GTP (ab203884), α‐actinin (ab9465), vimentin (ab8978), collagen I (ab34710), collagen III (ab7778) and connective tissue growth factor (CTGF, ab6992) were purchased from Abcam (Cambridge, MA, USA). Antibody against α‐smooth muscle actin (α‐SMA, A2547, for Western blot use) was purchased from Sigma‐Aldrich (St. Louis, MO, USA). Antibodies against total‐RAC1 (66122‐1‐lg), NOX2 (19013‐1‐AP), NOX4 (14347‐1‐AP), α‐SMA (14395‐1‐AP, for immunofluorescence stain use), cardiac troponin I (CTNI, 66376‐1‐Ig) and β‐actin (60008‐1‐Ig) were purchased from Proteintech (Hubei, China). 3H‐leucine (NET135H) was purchased from Perkin Elmer (Waltham, MA, USA), ROS assay (S0033) was purchased from Beyotime (Shanghai, China), and the Cytotoxicity Detection Kit (11644793001) was purchased from Roche (Hoffmann, Germany).
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10

Antibody Immunofluorescence Staining Protocol

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Antibodies to CD63 (ab216130), TSP5 (ab74524), V5 tag (SV5-Pk1) (ab27671) and vimentin (monoclonal ab8978) were purchased from Abcam. Antibodies to E-cadherin (4A2, mouse mAb 14472), vimentin (D21H3, rabbit mAb 5741) and N-cadherin (D4R1H, rabbit mAb 13116) were obtained from Cell Signaling Technology. Filamentous actin (F-actin) was stained using either Alexa Fluor Phalloidin probes 488nm (A12379), 568nm (A12380) or Plus 647 (A30107) from Thermo Fisher. Mouse or rabbit Alexa Fluor Plus secondary antibodies were purchased from Thermo Fisher and used for immunofluorescence imaging.
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