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Scope software

Manufactured by ADInstruments
Sourced in Australia

Scope software is a data analysis and visualization tool developed by ADInstruments. It enables users to record, analyze, and present experimental data from various scientific instruments. The software provides a user-friendly interface and a range of tools for data processing, visualization, and reporting.

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8 protocols using scope software

1

Hippocampal LTP Recording in Rats

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After the MWM test, each rat was gently placed in the head stereotaxic apparatus (Narishige, Japan) after anesthetized with 30% urethane (0.4 ml/kg). To insert stimulating and recording electrodes (Advent Co., UK), the rat’s skull was drilled a round skull window (5 mm in diameter) by surgical tweezers. The tip of the recording electrode was inserted 3.5 mm posterior to bregma and 2.5 mm lateral to the midline. The stimulating electrode was positioned into 4.2 mm posterior to bregma and 3.5 mm to the midline. The electrodes were gently inserted into the hippocampus, with a depth at approximately 2.5 mm beneath the pia mater for the stimulation electrode and 2 mm for the recording electrode. The test single stimuli were delivered to the CA3 region that evoked a response of 50% of its maximum ranging from 0.1 mA to 1.0 mA. Subsequently, stable baseline was recorded every 30 s for 20 min. Finally, the fEPSP was recorded every 60 s for 50 min (Scope Software, Powlab, ADInstruments, Australia) after a HFS was applied (200-Hz trains, 10 pulses/train every 2 s, repeated 10 times). The fEPSP slope was used to measure synaptic efficacy by normalization to the baseline.
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2

Measuring Rat Tibial Nerve Reflex

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Under isoflurane anesthesia, one hind limb was secured and a transcutaneous needle electrode inserted at the ankle for tibial nerve stimulation. Two recording electrodes were inserted into hind paw interosseous muscles. Stimulus generation and recording of M and H waves from the resulting electromyogram were performed using a Powerlab 4/30 connected to a computer running Scope software (AD Instruments, Colorado Springs, CO). Tibial nerve stimulation used bursts of 5 × 200 μs duration square waves with 40-μs interpulse intervals. Each burst was repeated at 1 Hz stimulation frequency, which, in normal rats, causes an ∼40% decrease in H-wave amplitude between the first and subsequent bursts (15 (link)). Stimulation intensity was increased by 0.125-V increments until the stimulus that produced the maximum H-wave amplitude (Hmax) was found. RDD was calculated as percentage change in H-wave amplitude evoked by the second (H2) compared with the first (H1) stimulation burst. In rats, H2 is representative of all subsequent responses (14 (link)).
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3

Analyzing Cortical Potentials and ECoG in V1

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The fPSPs in V1 were analyzed using Scope software (v. 4.1.4, AD Instruments). The amplitude of the negative peak of the fPSP was computed offline by calculating the voltage difference between the activity immediately prior to the stimulus artefact and that of the maximum peak negativity. These amplitude values were then averaged over 10-minute intervals and normalized by dividing them by the average baseline amplitude of each animal.
The ECoG recorded in V1 was analyzed offline using Chart software (v. 5.5.6, AD Instruments). Two 30-second epochs were analyzed, one immediately prior to the onset of LFS delivery (baseline ECoG) and one during LFS delivery (halfway during the 15 min LFS protocol). The raw ECoG signal was band-pass filtered (0.1 to 5 Hz) to attenuate stimulation-related, high-frequency artifacts in the recording. The filtered ECoG signal was then subjected to power spectral analysis using Chart software (Fast-Fourier Transformation, size 512, Cosine-Bell function applied).
All data are expressed as mean ± standard error of the mean (SEM). Statistical comparisons were made using mixed-model analyses of variance (ANOVA) and, where statistically appropriate, pairwise post hoc comparisons using the SPSS software package (version 21.0, SPSS Inc., IL, USA).
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4

Hippocampal LTP Assessment in Mice

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After the MWM test, mice were prepared for electrophysiological recording. Long-term potentiation (LTP) in the perforant pathway (PP) synapses of dentate gyrus (DG) was recorded to assess synaptic plasticity. LTP was viewed as a physical basis for memory encoding in the hippocampus 28 (link). After anesthetization with 5% urethane (30 ml/kg, ip), the mice were placed in a small-rodent stereotaxic frame (Narishige, Japan). After exposing the skull surface, a small hole was made in the left dorsal skull using a dental drill, and a bipolar stimulation electrode was slowly lowered into the PP. Subsequently, a monopolar stainless steel electrode was lowered into the DG. The optimal coordinates of electrodes' locations were confirmed based on the previously reported data 29 (link). Afterward, a stable normalized baseline was recorded for 20 min. Then theta burst stimulation (TBS) was used to induce LTP. After TBS, field excitatory postsynaptic potentials (fEPSP) were recorded every 60 s for 60 min (Scope Software, Powlab, AD Instruments, Australia). The mean fEPSP slope to reflect synaptic efficacy was normalized to the baseline.
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5

Quantifying Muscle Activity with Surface EMG

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Surface electromyogram (EMG) was recorded from the dominant
hand’s first dorsal interosseous (FDI) with a PowerLab 4/25T
data-acquisition device and Scope software (AD Instruments, Colorado Springs,
CO, USA). Electrodes were placed over the FDI belly (negative) and the first
interphalangeal joint of the second finger (positive). The ground electrode was
placed over the ipsilateral ulnar styloid process. EMG was digitized at 1kHz and
amplified with a range of ±10mV (band-pass filter 0.3–1000Hz).
Participants were monitored for drowsiness and were asked to keep their eyes
open throughout the experiment.
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6

Quantifying Synaptic Plasticity via fPSP Measurement

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All fPSPs were stored and analyzed using Scope software (v. 3.6.5, AD Instruments). In agreement with prior work [7 (link), 8 (link)], fPSPs in A1 elicited by MGN stimulation consisted of two negative-going peaks (see Figure 1(b)). The amplitude of each peak was computed offline by calculating the voltage difference between the activity measured immediately prior to the stimulus artifact and that of the maximum peak negativity. Amplitude values were averaged over 10-minute intervals and normalized by dividing them by the average baseline amplitude of each animal.
For paired-pulse responses, fPSPs were averaged for each ISI, before and after LTP induction (pre-LTP and post-LTP, resp.). A paired-pulse ratio (PPR) was calculated for each rat at each ISI by dividing the peak amplitude (computed as described above) of the second fPSP by that of the first fPSP (note that PPRs were calculated only for the first of the two negative peaks of the fPSP). A PPR value of greater than 1.0 reflects PPF, whereas a PPR value of less than 1.0 reflects PPD of synaptic transmission.
All data are expressed as mean ± standard error of the mean (SEM). Statistical comparisons were made using mixed-model analyses of variance (ANOVA) and, where statistically appropriate, pairwise comparisons using the SPSS software package (version 21.0, SPSS Inc., IL, USA).
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7

Normalized fPSP Amplitude Evaluation

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Data are expressed as mean ± standard error of the mean (SEM). The fPSP amplitude was computed offline by Scope software (v.4.1.1, AD Instruments). Values for each rat were averaged over 10 min intervals and these averages were normalized by dividing them by the averaged baseline (pre-TBS) amplitude of that animal. Data were statistically evaluated by repeated measures analysis of variance (ANOVA) and, if statistically appropriate, simple effects tests using the CLR ANOVA software package (v.1.1, Clear Lake Research Inc., Houston, TX). The level of significance for statistical analyses was set at P < 0.05. Note that the results of all statistical analyses are reported in the appropriate figure captions.
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8

Electrophysiological Mapping of Pelvic Nerve Inputs

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Two weeks later, PD and sham animals under urethane anesthesia (1.1g/kg subcutaneous injection; Sigma Chemical, St. Louis, MO, USA), a tungsten electrode was inserted stereotaxically into the ACC (3.2 mm lateral, 0.6 mm posterior to bregma, 1.8 mm ventral to dura) or the PAG (0.8 mm lateral, 7.8 mm posterior to bregma, 6.8 mm ventral to dura) according to the atlas of Paxinos & Watson (Paxinos, G., Watson, C., 1986. The Rat Brain in Stereotaxic Coordinates, 2nd ed. Academic, San Diego) (Fig. 1). Then, field potentials were recorded in the ACC or the PAG in separate groups of animals during electrical stimulation (1-15V, 100-200Hz and 30ms duration) of the pelvic nerve (PLN) located proximal to the major pelvic ganglia. During PLN stimulation, the bladder was kept in the emptied condition. The signals were amplified, filtered, and displayed on an oscilloscope. ACC and PAG field potentials were digitized and averaged from >8 individual responses using a PowerLab system (AD Instruments, Colorado Springs, CO, USA). Then, the area under the curve of electrical field potentials was calculated by Scope software (AD Instruments).
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