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13 protocols using protein blocker

1

Dual-Immunofluorescence Staining of IE and ET-1

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The IF was performed on 10% neutral-buffered formalin-fixed cells in 8-chamber slides. The fixed cells were then permeabilized with 0.1% Triton-X 100 in PBS for 15 min at RT, washed twice before blocking with protein blocker (Dako) for 20 min, Fc receptor blocker (Innovec) for 15 min followed by 30 min incubation with normal horse serum (Vector). Primary antibody was mouse anti-IE (Millipore, cat. no. MAB810R, 1:500) and rabbit anti-ET-1 (Abcam, cat. no. ab170544, 1:100; targeting the preproET-1, 183–211 aa). For dual-immunofluorescent staining, both primary antibodies were added together and incubated at 4 °C for 16–18-h. Secondary antibody goat anti-mouse Alexa Fluor 488 (cat. no. A11001) and goat anti-rabbit Alexa Fluor 594 (cat. no. A11012) were added together and incubated for 1-h at RT. All the secondary antibodies were from the Molecular Probes, Invitrogen and used at 1:500 dilutions. Nuclei were counterstained with 4′-6-Diamidino-2-phenylindole provided with the mounting medium (Vector, H-1200) and slides were viewed under Leica confocal microscope and analyzed with Leica Application Suite Advanced Fluorescence software or Zeiss LSM 700 Confocal with Zen software.
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2

Multi-Modal Tissue Staining Protocol

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For paraffin sections, tissues were embedded in paraffin after fixation in 4% paraformaldehyde and subjected to hematoxylin and eosin (H&E) and Oil Red O staining. For cryosection analysis, tissues were sectioned, washed with 60% isopropyl alcohol, and then stained for 1 h at 37 °C in Oil Red O solution (Fujifilm, Wako). Oil Red O-positive lipid droplets were quantified using Image J software. For detection of Dscr-1 in the mouse liver, mice were perfused with 2% paraformaldehyde in PBS. Slides containing cryosections were treated with acetone for 10 min, blocked with a protein blocker (DAKO), and stained with our generated anti-Dscr-1 antibody (13 (link)). Zenon labeling technology (Invitrogen) was used to amplify the mouse tissue signal using a mouse monoclonal antibody. To detect 4-HNE in mouse liver, tissue slides were incubated with an anti-4-HNE antibody (JaICA) and subsequently with HRP-conjugated secondary antibody; the slides were then incubated with DAB reagent and hematoxylin counterstain.
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3

Immunohistochemical Detection of pStat3 in Brain Tumors

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Formalin-fixed, paraffin-embedded brain tumor slides were incubated for 1 hour at 60°C, dewaxed in xylene, and rehydrated in a graded ethanol series (100%, 95%, 70%) followed by water. Antigen retrieval was performed using a citrate buffer at pH9 in a pressure cooker at 120°C for 12 minutes, followed by two washes in 1 × TPBS buffer mixed with 0.1% Tween 20 for 5 minutes. Peroxidase activity was blocked with 10% methanol and 1% hydrogen peroxide for 30 minutes followed by a wash. The slides were then blocked with protein blocker (Dako) for 15 minutes. The primary antibody was added to the slides and incubated overnight at 4°C (pStat3, abcam: ab76315). Three washes were done followed by incubation with the secondary antibody for 30 minutes at room temperature. The DAKO DAB kit was used for color development (10–60 sec depending on the antibody), then counterstained with hematoxylin (25 seconds) and bluing buffer, rehydrated, and cover-slipped.
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4

Quantitative Immunohistochemical Analysis of Kidney Caspase-3

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For Immunohistochemical analysis, kidney sections were deparaffinized and rehydrated, and to expose the antigens, they were boiled in a target retrieval solution (TRIS buffer pH 9.0) for 30 min. Endogenous peroxidase activity was blocked with 3% H2O2 for 15 min at room temperature. Nonspecific binding was prevented by incubating the sections with a protein blocker (Dako, CA). Sections were incubated overnight at 4°C with primary rabbit anti‐caspase‐3 active monoclonal antibody (1:100, Santa Cruz Biotechnology, CA). After washing with TBS, the sections were incubated with horseradish peroxidase‐conjugated polymer (Dako) for 30 min at room temperature. Slides were rinsed with PBS, and the antibody–antigen reactions were visualized with 3, 3’‐diaminobenzidine (Dako, CA). The sections were lightly counterstained with hematoxylin. Analyses were performed using light microscopy (Leica Imaging Systems) at 20× magnification, and the stained proteins were quantified using Corel Photo‐Paint 12 and UTHSCSA – Image Tool software. The picture analysis was performed in two phases: first, measurement of the tissue area with the subtraction of the blank areas on the picture; second, calculating the percentage of staining present on the first phase picture.
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5

Visualizing Vascular Endothelial Cells in Femoral Bone

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Femoral bones were cryoembedded in OCT compound and sectioned at 8-µm thickness. Sections were fixed with methanol for 15 min and blocked with a protein blocker (Dako). Specimens were then incubated with goat anti–VE-cadherin antibody (R&D Systems) followed by donkey anti–goat IgG antibody conjugated to Alexa Fluor 488 (Molecular Probes) and nuclear staining. Images were acquired with a confocal laser-scanning microscope (FV1000; Olympus). Blood vessel perimeters were measured using ImageJ (NIH).
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6

Immunohistochemical Analysis of Kidney Sections

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The kidney slices were deparaffinized and rehydrated, as described above. To expose the antigens, the kidney sections were boiled in a target retrieval solution [citrate buffer (pH 6.0) for fibroblast-specific protein 1 (FSP1), TRIS buffer (pH 9.0) for α-smooth muscle actin (α-SMA) and ED-1] for 30 min. Endogenous peroxidase activity was blocked with 3% H2O2 (Labsynth) for 10 min at room temperature. Nonspecific binding was prevented by incubating the sections with a protein blocker (Dako, Carpinteria, CA, USA). The sections were incubated overnight at 4°C with primary antibodies: α-SMA (cat. no. A2547; 1:500; Sigma-Aldrich), FSP1 (cat. no. A5114; 1:400; Dako) or CD68/ED-1 (cat. no. MCA341R; 1:100; Serotec, Oxford, UK). Following washing with Tris-buffered saline (TBS) [50 mM TRIS, 150 mM NaCl], the sections were incubated with a horseradish peroxidase-conjugated polymer (Dako) for 30 min at room temperature. The slides were rinsed with TBS and the sites of antibody-antigen binding were visualized with 3,3′-diaminobenzidine (Dako). The sections were lightly counterstained with hematoxylin. The analyses were performed using light microscopy (Eclipse 2000 camera Nikon DS-Fi2) and the stained proteins were quantified using Corel Photo-Paint 12 (CorelDRAW version 12) and UTHSCSA-ImageTool software (version 3.0).
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7

Immunofluorescence Staining for PrlR Localization

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For immunofluorescence staining, the cells were allowed to grow on coverslips and cultured in complete medium at 37°C, 5% CO2. Cells were fixed with ice-cold methanol for 10 min; then excess methanol was removed. After three subsequent washes with PBS, the cells were blocked with protein blocker (Dako Cytomation, Denmark) and then incubated with the primary antibody mouse anti-PrlR clone 1A2B1 in dilution of 1:50 (Invitrogen) over night at 4°C, washed 3 times with PBS; and then incubated for 1 h at room temperature in the dark with the secondary antibody Alexa fluor 488- conjugated goat anti-mouse IgG (Invitrogen). Finally, the slides were washed, mounted with Vectra shield containing DAPI (H-1200, Vector Laboratories, CA, USA) and stored at 4°C in the dark. Controls for specificity and background staining were performed by incubating samples with mouse IgG antibody. Confocal Laser Scanning Microscopy (CLSM) (Zeiss, Germany) was used to obtain the images.
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8

Multiparametric Immunohistochemistry Analysis

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Sections 5 μm in thickness were de-paraffinised and re-hydrated. A pretreatment method using heat-induced epitope retrieval was used, and the nonspecific binding was blocked with a protein blocker (DakoCytomation, Trappe, France) for 30 min at room temperature (RT). The sections were then incubated with the following primary antibodies against Ki67 (ab15580; Abcam), EpCam (clone G8.8; Biolegend), α-SMA (ab21027; Abcam), CD34 (RAM34, eBioscience), GP38 (MA615113; Thermo Fisher), CD24 (ab64064; Abcam), Lysozyme (ab108508; Abcam), Muc2 (Thermo Fisher) and ZO-1 (Invitrogen) antibodies.
The co-labelling with antibodies from the same species was performed using Opal™ Multiplex IHC kits (Akoya). After incubation with the primary antibodies, the slides were washed in PBS-T three times and probed with appropriated fluorescence-conjugated secondary antibodies for 1 h at room temperature. After three washings in PBS, the cell nuclei were counterstained by Vectashield mounting medium with DAPI (Vector).
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9

Hypoxic cell detection in tendons

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To detect hypoxic cells in tendons, we used the reductive 2nitroimidazole compound pimonidazole PIM from hypoxyprobetm-1 plus kit (HP1-100,Chemicon International, Temecula, CA, which is a chemical marker for hypoxia, when administered in vivo, forms stable adducts in hypoxic regions that then can be identified with an anti-PIM antibody HP1-100, Chemicon International [16] . After 1 week and 8 week of collagenase injection, the mice were injected i.p. with PIM hydrochloride (Chemicon International, Temecula, CA) at 120 mg/kg dose, and the tendons and thymus harvested after 3 hours postinjection. The Achilles tendons and thymocytes were embedded in paraffin. Sections were deparaffinized in xylene, washed, and hydrated with washing ethanol. We stained paraffin-embedded sections with a mouse monoclonal anti-PIM antibody (Hypoxyprobe-1 Kit; Chemicon International, Temecula, CA) or a mouse IgG1 isotype control anti-body for 1 hour at 37 C in the presence of a protein blocker (DakoCytomation, Carpinteria, CA). Then, sections were incubated with HRP linked secondary antibodies for 30 minutes. Finally use DAB solution visualize Immunoreactive proteins.
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10

IgG4-RD Submandibular Gland Analysis

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Specimens of submandibular glands for both IgG4-RD and controls and specimens of lymph nodes for controls were examined by immunohistochemical analysis of IgG, IgG4, IL-4, IL-13, IL-18 and IFN- expression. Three-µm-thick sections were prepared from each block of tissue embedded in paraffin. Deparaffinised sections were treated with 3% hydrogen peroxide for 10 min to inactivate endogenous peroxidase activity. The sections were incubated with protein blocker (Dako, Glostrup, Denmark) for 30 min and incubated at 4°C overnight with rabbit anti-human IgG antibody(1:5000, Dako), mouse anti-human IgG4 antibody (1:2000, Life technologies, Grand Island, NY), rabbit anti-human IL-18 antibody (PM014, 1:2000, Medical and Biological Laboratories CO., LTD., Nagoya, Japan), rabbit anti-human IL-13 antibody (06-1090, 1:200, MILLIPORE, MA, USA), rabbit anti-human IL-4 antibody (ab9622, 1:200, Abcam, Cambridge, UK) and rabbit anti human IFN- antibody (ab9657, 1:500, Abcam) as primary antibodies. The sections were washed three times with phosphate-buffered saline (PBS, pH 7.2). After washing with PBS, the sections were exposed to Envision + secondary antibody (Dako) for 30 min. The reaction products were developed by immersing the sections in a 3′3-diamidobenzidine tetrahydrochloride solution. The sections were counterstained with hematoxylin.
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