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79 protocols using gapdh

1

Protein Expression Analysis in Peritoneal Tissues

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Protein from peritoneal tissues was extracted as previously reported [20 (link), 21 (link)]. Protein expression was analysed by western blot analysis with primary antibody against collagen I (Col-I) (Boster, Wuhan, China), fibronectin (FN) (Abcam, Cambridge, UK), E-cadherin (Abcam, Cambridge, UK), α-SMA (Abcam, Cambridge, UK), zinc-finger-enhancer binding protein 1 (ZEB1) (Proteintech, Wuhan, China), ZEB2 (Abcam, Cambridge, UK), or glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Boster, Wuhan, China) and then incubated with an appropriate secondary antibody. After washing, the protein was visualised with Super Signal Western Pico chemiluminescent substrate (Pierce, Rockford, IL). The signals were detected by the LiCor/Odyssey infrared image system (LI-COR Biosciences, Lincoln, NE, USA) and quantified by Image J software (National Institutes of Health). The ratio for the protein of interest was normalised against GAPDH and expressed as mean ± standard deviation (SD).
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2

Protein Expression and Analysis

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Cells were split by radio immunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) add with protease inhibitor (Pierce, Rockford, IL, USA). After centrifugation removal cell debris, add 1/4 volume of lysis buffer to the lysates, and then boiling 10 min in water. The total protein sample was pointed into and separated in the SDS-polyacrylamide gel. Then transferred it into a PVDF membrane (Millipore, Boston, MA, USA). Next, the membrane was blocked in 5% defatted milk for 2 h. After that, the membrane was incubated with primary antibodies at 4 °C overnight followed by a secondary antibody at room temperature for 1.5 h. Protein bands were exposure by chemiluminescence reagents (Millipore) and quantified using the Image Lab Image Document. Antibodies PPARγ, ATGL (Cell Signaling, Boston, MA, USA), KLF9 (Abcom, Cambridge, UK), aP2, FAS, cyclin B, cyclin D, cyclin E, p27, ZEB1 (Santa Cruz, Dallas, TX, USA), GAPDH (Boster, Wuhan, China), β-tublin (Sungene Biotech, Tianjin, China) were used.
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3

Western Blotting Analysis of EMT Markers

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Western blotting was performed as previously described [43 (link)]. The following antibodies were used: Lin28B (Abcam, Cambridge, UK, ab71415), E-cadherin, Vimentin, Snail (Abcam, Cambridge, UK), GAPDH (Boster, Wuhan, China), c-MYC, HMGA2 and KRAS (Proteintech, Chicago, USA). Bands were visualized using an enhanced chemiluminescence (ECL) kit (Millipore, Billerica, MA, USA) according to the manufacturer's protocol. The results using the Image J software to measure its gray value.
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4

Western Blot Analysis of Inflammatory Proteins

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Total proteins were extracted from cultured cells with RIPA buffer, and protein concentration was determined using BCA protein assay kit (Thermo Fisher Scientific). Equal amounts of proteins were separated using SDS/10% polyacrylamide gel electrophoresis (SDS/PAGE), transferred to 0.22 µm polyvinylidene difluoride (PVDF) membranes, and incubated with specific antibodies. Proteins were detected using chemiluminescence (ECL). The intensity of the bands was quantified by ImageJ. Primary antibodies, ASC (ab227502, ABCAM), caspase-1 (ab62698, ABCAM), p-caspase-1, IL-1β (BA3711, BosterBio), p-IL-1β, IL-18 (PB0057, BosterBio), p-IL-18, and GAPDH (A00227-1, BosterBio) were obtained from Cell Signaling Co. (Cell Signaling Technology, U.S.A.).
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5

Western Blotting of Cortex and Myocardium Proteins

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Western blotting with proteins of the cortex and myocardium was performed as described previously (Mlyniec et al. 2014a , b (link)). To confirm equal loading of the samples on the gel, the membranes were re-probed with an antibody specific to GAPDH as an internal control. The specific primary antibodies used included rabbit polyclonal antibodies against CAIII (1:1000; abcam), Beclin-1 (1:200; Santa Cruz), LC3 (1:1000; abway), P53 (1:1000; abcam), IL-17 (1:1000; abcam), NF-κB (1:200; Santa Cruz), GAPDH (1:2000; Boster). Finally, the X-ray films were developed and fixed in a dark room.
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6

Analyzing Oxidative Stress Markers in MC3T3-E1 Cells

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Whole cell extracts of MC3TE-E1 for western blotting were prepared after the indicated treatment for 3 days as previously described [19 (link)]. 20 μg protein from total cell lysate was prepared using PRO-PREPTM protein extraction solution (Boca Scientific Inc., Boca Raton, FL) and carried out subsequent electrophoresis, according to the manufacturer’s instruction. The primary antibodies against the following proteins: FoxO1 (Abcam, ab52857, 1:1000), SIRT1 (Abcam, ab189494, 1:1000), human catalase (CAT, Abcam, ab130029, 1:1000), glutathione peroxidase (GPX1, Abcam, ab108427, 1:1000), superoxide dismutase 2 (SOD2, Abcam, ab252426, 1:1000). Expression levels of the target protein were normalized against glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Boster, Wuhan, China, 1:2000) levels in each sample. The following day, HRP-conjugated goat anti-rabbit, which used as secondary antibodies, was purchased from Santa Cruz Biotechnology (Santa Cruz, CA) and the results were detection and analysis by using an iBrightCL1000 (Invitrogen, Carlsbad, CA).
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7

Hippocampal Protein Analysis in Mice

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Mice (n = 6 in each group) were decapitated, the hippocampus were immediately dissected, frozen and stored at −80 °C. Tissue samples were lysed and western blots were performed as previously described [11 (link)]. Primary antibodies include GFP (1:1000, Beyotime, cat # AG281, Shanghai, China), Glial fibrillary acidic protein (GFAP) (1:1000, Wanleibio, cat # WL0836, Shenyang, China), Flag (1:1000, abm, cat # G188, Zhenjiang, China), Oligo2 (1:1000, Wanleibio cat # WL04942, Shenyang, China), NeuN (1:1000, Wanleibio, cat # WL03099, Shenyang, China), doublecortin (Dcx) (1:1000, Proteintech, cat # 13925-1-AP, Rosemont, USA), GAPDH (1:5000, Boster, cat # BM1623, Wuhan, China) and β-Tubulin (1:5000, Beidibio, Nanjing, China). HRP-conjugated secondary antibodies purchased from Immunoway Biotechnology Company (goat anti mouse cat # RS0001 and goat anti rabbit cat # RS0002, Plano, TX, USA) were used to probe these blots. Protein visualization was carried out using an enhanced chemiluminescen (ECL, Meilunbio, Dalian, China). The signal intensity was obtained by densitometric scanning.
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8

Protein Extraction and Western Blot Analysis

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Proteins from all the skeletal muscles and cells were extracted using the Protein Extraction Reagent (KeyGENBioTECH, Nanjing, China), and the concentrations were determined with the BCA Assay Kit (KeyGENBioTECH, Nanjing, China). Next, equal amounts of protein were separated on 10% SDS-PAGE gels followed by electrotransfer to polyvinylidenedifluoride membranes (PVDF). After blocking with 5% skim milk powder in 0.05% TBST, the membranes were incubated with the following primary antibodies: FTO, phospho-AMPKα2 (Abcam), AMPKα2 (GeneTex), METTL3 (Proteintech), METTL14 (Sigma), FAS, C/ebpα, ATGL, PGC1α (Santa Cruz), GAPDH (Boster) and β-actin (Hua An, Hangzhou, China). The secondary antibodies were HRP-conjugated anti-mouse and anti-rabbitIgG (Hua An, Hangzhou, China). Finally, the immunocomplexes were detected using the ECL Western Blotting Detection System (Amersham, Biosciences, Piscataway, NJ, USA).
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9

Western Blot Analysis of Protein Modifications

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Proteins were extracted using lysis buffer (125 mM Tris-HCl pH 6.8, 25% glycerol, 5% SDS) supplemented with protease inhibitor (Roche), separated using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred onto nitrocellulose membranes (HAHY00010, Millipore). The membranes were blocked in PBST containing 5% skim milk and then incubated with primary antibody. After incubation with a secondary antibody (donkey-anti-mouse or donkey-anti-rabbit, IRDye 700 or IRDye 800, respectively), signals were quantified using an Odyssey infrared imaging system (LI-COR) at 700 nm or 800 nm. The following primary antibodies were used: SDMA (Cell Signaling), PRMT5 (Abcam), HNF4α (Santa Cruz), H4R3me2s (Active Motif), and GAPDH (Boster).
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10

Protein Expression Analysis of Key Signaling Pathways

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Total protein was extracted from the indicated cells or tissues using RIPA lysis buffer (Beyotime, China), and the protein concentration was measured using a BCA protein assay kit (Beyotime, China). The protein was separated by 10% SDS-PAGE and subjected to western blotting, as described previously [43 (link)]. The primary antibodies used in western blotting were as follows: LIMK1(1:1000, ab81046, Abcam), p-cofilin (1:1000, #3313, CST), cofilin (1:1000, #5175, CST), p-CREB(Ser133) (1:1000, #9198, CST), CREB (1:1000, #9197, CST), MMP2(1:1000, ab97779, Abcam), ITGB1(1:1000, ab134179, Abcam) and COL1A1(1:1000, #72026, CST); GAPDH (1:1000, Boster, Wuhan, China) was used as a loading control. Horseradish peroxidase–conjugated anti-mouse or anti-rabbit IgG antibodies (1:3000, Boster, Wuhan, China) were used as secondary antibodies, and the protein expression levels were visualized using an enhanced chemiluminescence system (Bio-Rad, Hercules, EDAUSA). Band intensities from three biological experiments were quantified by densitometry using ImageJ software.
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