The largest database of trusted experimental protocols

11 protocols using nbd cl

1

Characterization of Tau-Class GST Mutants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Substrates NBD-Cl, CDNB, NBC, DCNB, ECA, 4-NPA, and Cum-OOH (Merck, Germany), which are typical substrates for detecting detoxification and GPOX activities of tau class GSTs, were used to investigate the enzyme activities of wild-type and mutants. The activity towards NBD-Cl was determined according to the method described by Ricci et al. [43 (link)], the activity towards CDNB, NBC, DCNB, and ECA was determined according to the methods described by Habig et al. [44 (link)], and the activity towards Cum-OOH was determined according to the method described by Edwards and Dixon [45 (link)]. Taking NBD-Cl and GSH as substrates (Merck, Germany), the kinetic parameters of mutant enzymes were monitored according to the description of Yang et al. [21 (link)]. The Km and Vmax values for GSH were obtained by fixing the NBD-Cl concentration at 1.0 mM and detecting the enzyme activity with a GSH concentration in the range of 0.2 to 1.0 mM. The Km and Vmax values for NBD-Cl were obtained by fixing the GSH concentration at 1.0 mM and detecting the enzyme activity with NBD-Cl concentrations ranging from 0.2 to 1.0 mM. Non-linear regression analysis of Graphpad Prism 10.0 (Graphpad Software Inc., San Diego, CA, USA) was applied to the data to obtain the kinetic parameters of mutants. The experimental data were represented as the average of three independent experiments.
+ Open protocol
+ Expand
2

Spectroscopic Analysis of Oxidant-Treated Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein (10 μm) was exposed to oxidants (90 μm) for 30 min. NBD‐Cl (Sigma‐Aldrich, 100 μm) was added to the samples and was incubated for 30 min, at 37 °C, after the samples were subjected to spin column (Amicon Ultra 10 kDa, Millipore, Ireland). Electronic absorption spectra were carried out in a photodiode Multispec 1501 spectrophotometer (Shimadzu Scientific Instruments, Columbia, MD), using quartz cuvettes with 1.0‐ and 0.1‐cm optical path and 0.5‐nm slit 66.
+ Open protocol
+ Expand
3

Quantifying Free N Termini in Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify the free N termini level, soluble proteins were extracted from leaves in 50 mM sodium citrate buffer containing 1 mM EDTA (pH 7.0) and desalted using PD SpinTrap G-25 columns (GE Healthcare) to remove free amino acids. Crude protein extract (2.5 μM) was incubated with 0.5 mM NBD-Cl (Sigma-Aldrich) in 50 mM sodium citrate buffer containing 1 mM EDTA (pH 7.0) for 14 h at room temperature. The fluorescence intensity was quantified with a FLUOstar Omega plate reader (BMG Labtech; excitation: 470±10; emission: 520 nm). For the quantification of free N termini in response to ABA (Sigma-Aldrich), leaf discs were floated (30 mg) in ½ × Hoagland medium supplemented with 50 μM ABA for 2, 4, 6 and 8 h before analysis.
+ Open protocol
+ Expand
4

Determination of PRD Arginine in Tablets

Check if the same lab product or an alternative is used in the 5 most similar protocols
All materials as well as reagents utilized were of analytical grade.

Alamriya company (Alexandria, Egypt) supplied a pure sample of PRD arginine, with a purity of 99.6%.

Coversyl® tablets labeled to contain 5 mg PRD arginine/tablet (Batch # 24462) or 10 mg PRD arginine/ tablet (Batch # 24316).

They are products of Servier company (Lyon, France) and were obtained from a local pharmacy.

Sigma-Aldrich (Louis, USA) was the company from which methanol (HPLC grade) was purchased.

Sigma-Aldrich (Louis, USA) was the company from which NBD-Cl was obtained, and using methanol, a fresh stock solution of 0.2% NBD-Cl was prepared.

From El-Nasr Chemical Co. (Cairo, Egypt), boric acid and sodium hydroxide were purchased. Both were mixed with appropriate volumes of 0.2 M aqueous solutions to obtain 0.2 M borate buffer. The used buffer solutions of pH 6.0–12.0 were prepared with the aid of a pH meter for adjustment of the required pH, and the buffer solutions were stable at room temperature.

From El-Nasr Chemical Co. (Cairo, Egypt), conc. HCl (32%), sodium dihydrogen phosphate, and orthophosphoric acid were also purchased.

+ Open protocol
+ Expand
5

Sulfenic acid detection via NBD-Cl adducts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sulfenic acid-labeling reagent 7-chloro-2-nitrobenzo-2-oxa-1,3-diazole (NBD-Cl) was purchased from Sigma. NDB-Cl react with both sulfenic acid and thiols forming adducts with different spectra. The amount of modified CD45, LAR, PTP1B thiol adduct with NBD (Cys-S-NBD adduct) was measured after 30 min incubation with NDB-Cl (0.6 mM in a 0.5 mL of sample) as absorbance in 347 and 420 nM with spectrophotometer.
+ Open protocol
+ Expand
6

Chitosan-Based Biochemical Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chitosan, medium molecular weight, deacetylation value of 75–85%, and viscosity of 200–800 cP, was purchased from Aldrich Chemical Co.
Bovine serum albumin, acrylamide, N,N′-methylenebisacrylamide, trichloroacetic acid (TCA), FeSO4, sulfuric acid, cumene hydroperoxide (CHP), butylhydroxytoluene, methanol, xylenol orange, di-nitrophenylhydrazine (DNPH), guanidine, ethanol, ethyl acetate, hydrochloric acid, Coomassie® Brilliant Blue R-250, thioglycolic acid, NBD-Cl, and o-phthalaldehyde (OPA) were purchased from Sigma-Aldrich (St. Louis, Missouri, USA).
Thiobarbituric acid was purchased (TBA) from Fluka (Sigma-Aldrich, Toluca, MX); sodium chloride, EDTA disodium salt, N,N′,N′- tetramethylethylenediamine (TEMED), Tris (base), urea, β-mercaptoethanol, glycine, acetic acid glacial, sodium phosphate monobasic, sodium phosphate dibasic, and copper sulfate pentahydrate were purchased from J.T. Baker (Pennsylvania, USA); sodium carbonate and lactic acid were purchased from Fermont (Monterrey, MX); sodium dodecyl sulfate (SDS) and bromophenol blue were obtained from Hycel (Mexico, MX); and plate count agar was purchased from Bioxon, Becton and Dickinson (Mexico, MX). All reagents used were of analytical grade.
+ Open protocol
+ Expand
7

Synthesis of NBD-Acg Compound 2

Check if the same lab product or an alternative is used in the 5 most similar protocols
NBD-Acg, compound 2, was prepared in 7 steps using the previously described synthetic intermediate 4, earlier prepared en route the synthesis of asimicin and bullatacin stereoisomers [31 (link), 32 ] and the commercially available NBD-Cl (4-Chloro-7-nitrobenzofurazan), as outlined in Fig. 1. NBD-Cl and chemical reagents used in NBD-Acg synthesis are commercially available and were purchased from Sigma-Aldrich.

Synthesis of NBD-Acg, 2. Abbreviations: CH3CN, Acetonitrile; ClTi(OPr)3, Chlorotrisopropxytitanium (IV); CH2Cl2, Methylene chloride; DMF, Dimethyl formamide; DMSO, Dimethyl sulfoxide; Et2O, diethyl ether; EtOAc, Ethyl acetate; HF, Hydrogen fluoride; iPr2EtN, N,N-diisopropylethylamine; MeOH, Methanol; NaN3, Sodium azide; NaHCO3, Sodium hydrogen carbonate; Pd-C, Palladium on Carbon; RT, Room temperature.

Fig. 1
+ Open protocol
+ Expand
8

Quantitative Analysis of L-Ornithine

Check if the same lab product or an alternative is used in the 5 most similar protocols

l-Ornithine monohydrochloride (l-ORN), NBD-Cl, methanol, sodium hydroxide, sodium tetraborate-10-hydrate (Na2B4O7·10H2O) and hydrochloric acid were all purchased from Sigma-Aldrich, Germany and used without further purification. Now Foods® dietary supplement capsules (500 mg ORN per capsule) were purchased from a local hypermarket, Doha, Qatar.
+ Open protocol
+ Expand
9

HCMV Infection Inhibition Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
NPPB, apamin, α-pompilidotoxin (α-PMTX), and tetraethylammonium (TEA) were gifts from Jamel Mankouri (University of Leeds). GaTx2 was purchased from Tocris, while DIDS, SITS, N-ethylmaleimide (NEM), 2-iminothiolane (2-IT), Nbd-Cl, 5,5′-dithiobis(2-nitrobenzoic acid) (Nbs2), and heparin were all purchased from Sigma-Aldrich and used at the concentrations described in the figures. The concentrations of NPPB and GaTx2 used were based on the concentrations previously established to be required for inhibition of chloride ion channels (51 (link), 52 (link)). For βME experiments, HCMV was pretreated with DIDS or dimethyl sulfoxide (DMSO) for 1 h and then subsequently incubated with βME for 10 min, diluted, and used to infect HFFs by a standard procedure. For enzymatic removal of heparin sulfates, HFFs were treated with heparinase I (New England Biolabs) at 30°C for 1 h prior to infection with HCMV.
+ Open protocol
+ Expand
10

Fabrication of Fluorescent Nanoprobes

Check if the same lab product or an alternative is used in the 5 most similar protocols
4-Chloro-7-nitro-2,1,3-benzoxadiazole (NBD-Cl) and 3-aminopropyltriethoxysilane (APTES) were purchased from Sigma-Aldrich (Shanghai, China). Ammonium hydroxide (25%), absolute ethanol, methanol, acetic acid (HAc), Tellurium powder, cadmium nitrate (Cd(NO 3 ) 2 ), tetraethoxysilicane (TEOS) and phosphate buffered saline (PBS) were supplied by Sinopharm Chemical Reagent Co. Ltd. (Shanghai, China). 2,4-dichlorophenoxyacetic acid (2,4-D), phenoxyacetic acid (PA), 2,4-dichlorophenylacetic acid (DCPA) and 4-chloro-2-methylphenoxyacetic acid (MCPA) were purchased from J&K Technology Ltd. (Beijng, China).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!