The largest database of trusted experimental protocols

7 protocols using formical 4

1

Decalcification Protocol for Femoral Heads

Check if the same lab product or an alternative is used in the 5 most similar protocols
Femoral head samples were fixed for 24 hours in 4% paraformaldehyde (Electron Microscopy Sciences, 15710-S) in PBS at 4°C. Samples were washed 3 times for 30 minutes in PBS at 4°C. Samples were decalcified in 0.5M EDTA at pH8 (Invitrogen, 15575-038) for 8 days. The EDTA was changed every 2 days. After decalcification, samples were washed 5 times for 1 hour in PBS and fixed for 24 hours in 4% paraformaldehyde at 4°C. Samples were processed and embedded in paraffin by the Children’s Hospital of Philadelphia’s pathology core. The AML and NSM samples were obtained from the UPenn Department of Pathology and were previously decalcified using the following protocol: Bone marrow biopsies were fixed in buffered zinc formalin for a minimum of 1 hour. Bone marrow biopsies were then decalcified in Formical-4 (StatLab, SKU #: 1214-1) for 2 hours. Samples were rinsed with running water for a minimum of 10 minutes. Samples were placed in neutral buffered formalin and submitted for paraffin embedding.
+ Open protocol
+ Expand
2

Comprehensive Histological Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histology, soft tissue was fixed in formalin and skull, femurs, and spine were decalcified using Formical-4 (StatLab). Tissues were routinely processed, sectioned, and stained with hematoxylin and eosin (H&E). For immunohistochemistry, slides were deparaffinized and rehydrated before steaming in EDTA HIER Buffer (Thermo Scientific) for 20 minutes. Endogenous peroxidases were quenched with BLOXALL (Vector Labs), and sections blocked with Normal Horse Serum (Vector Labs). Slides were incubated with antibodies directed against CK8 (Covance), AR (Santa Cruz), MYC (Abcam), E-cadherin (Cell Signaling), CK14 (Covance), Synaptophysin (Abcam), IBA-1 (Wako Chemical), Pancytokeratin (Sigma), Ki67 (Abcam), F4/80 (Cell Signaling) and CD11b (Abcam). Staining was visualized with ImmPRESS HRP Polymer detection kit and ImmPACT DAB (Vector Labs). After staining, slides were scored 0–4 based on number of positive cells and intensity of staining.
+ Open protocol
+ Expand
3

Histological Analysis of Rodent Heads

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues were fixed in 10% NBF for at least 24 hours, embedded into paraffin blocks, and cut into 5 μm sections. Heads were dissected, and lower jaw, brain, and ocular bulbs were removed to allow uniform fixation and decalcification of the skull. Rabbit heads were fixed and decalcified using Formical-4 (StatLab Medical Products) for several weeks, whereas mouse heads were fixed in 10% NBF for 48 hours and decalcified with Immunocal (Decal Chemical Corp.) for 24 hours. Following decalcification, the nasal cavity was cut at selected level as previously described (78 (link), 79 (link)). Fixed specimens were embedded, sectioned, and stained with H&E, AB-PAS, or Masson’s trichrome stain. Tissue blocks received a numerical code at time of embedding, and scoring of the slides was performed by an investigator blinded to specimen genotype.
+ Open protocol
+ Expand
4

Safranin O-Fast Green Cartilage Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were fixed in 10% neutral buffered formalin (NBF, StatLab Medical Products, Brooklyn, NY) for 24 ​h and decalcified with Formical-4 (StatLab Medical Products, Brooklyn, NY) for 15–20 days until decalcification endpoint. Paraffin blocks were sliced at 4 ​μm and stained with Safranin O-Fast Green (Sigma-Aldrich, St. Louis, MO, HT90432, F-7252) in the sagittal plane to evaluate distribution of proteoglycans in the cartilage. Slides were imaged (20x) using an EVOS FL Auto microscope (Life Technologies, Carlsbad, CA). Histological focus was kept consistent with the ROI analyzed at UHF-MRI. Histological grading was scored following Laverty et al. standards [38 (link)].
+ Open protocol
+ Expand
5

Histopathological Analysis of Mouse Ear Fibroblasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse ear fibroblasts (Merfs) were derived and maintained as described previously (Stanley et al. 2016 (link)). For histopathology studies, mice were individually euthanized by exposure to gradually increasing concentrations of CO2, then perfusion with heparinized saline followed by 10% NBF via left cardiac ventricle. Perfused tissues were fixed in 10% NBF for at least 24 h prior to trimming. The head and hindlimb were separately decalcified with Formical 4 (StatLab Medical Products). Gross examination and tissue collection was performed as described in Brayton et al. (2014) (link). Sections (∼5 µm) were stained with hematoxylin and eosin and reviewed by two veterinary pathologists (B. Kang and C. Brayton). Image capture was performed on a Nikon 55i microscope and slides were scanned at 20x on an Aperio AT2 instrument (Leica Biosystems). Immunohistochemistry was performed using standard methods on formalin-fixed paraffin-embedded tissues using these antibodies: Ki67 (SP6, Abcam, ab16667), Cleaved caspase 3 (Asp175, 5A1E, rabbit mAb #9664, Cell Signaling Technology), and ZCCHC8 (R34469, polyclonal rabbit, Sigma-Aldrich).
+ Open protocol
+ Expand
6

Comprehensive Pathological Evaluation of Lifetime Carcinogenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For this lifetime carcinogenesis study, all disease states were interpreted within the context of a systematic pathologic evaluation directed by board-certified veterinary pathologists (E.F.E. and D.A.K.). Structured necropsy and tissue collection protocols were followed for each mouse and involved photodocumentation of all gross lesions, collection of frozen tumor material, and preservation of tumor material in RNAlater. All tissues were grossly evaluated for all mice. To evaluate brain tissues and Harderian glands, craniums were decalcified for 48 hours in Formical-4 (StatLab, McKinney, TX 75069, product 1214) and five coronal sections of the skull were reviewed for each mouse. All gross lesions were evaluated microscopically and fixed in 10% neutral-buffered formalin and paraffin-embedded, and 5-μm sections were stained with hematoxylin and eosin (H&E) and evaluated by a veterinary pathologist. For mice with solid tumors, all lung fields were examined histologically to detect the presence or absence of micrometastases. Tumor nomenclature was based on consensus statements produced by the Society of Toxicologic Pathology for mouse tumors (www.toxpath.org/inhand.asp). Representative histologic images routinely stained with H&E are presented in figs. S2 (A to E) and S3 (A and B).
+ Open protocol
+ Expand
7

Diagnostic Bone Marrow Analysis of AML

Check if the same lab product or an alternative is used in the 5 most similar protocols
We identified 143 cases of acute myeloid leukemia from the Stanford Department of Pathology (obtained from 12 May 2004 to 25 October 2013) for which the original diagnostic bone marrow core biopsy was available. Cases were classified according to the most recently available 2016 World Health Organization categories. 1, 3 After fixation in Bouin solution and decalcification in Formical-4 (StatLab, McKinney, TX, USA), sections of the paraffin-embedded core biopsy were stained with an antibody to p53 (clone DO-7 mouse, Ventana, 1:400 dilution, Ventana CC1 retrieval solution, pH 6.0). For the entire cohort, core biopsies were considered adequate for evaluation if there were at least ~1000 cells present for evaluation and this was the case even for biopsies with hypocellular marrow. This study was approved by Stanford University's institutional review board.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!