The largest database of trusted experimental protocols

Avance 500 nmr spectrometer

Manufactured by Bruker
Sourced in Germany, Switzerland, United States

The Avance 500 NMR spectrometer is a high-performance nuclear magnetic resonance (NMR) instrument designed for advanced analytical applications. It operates at a magnetic field strength of 500 MHz and provides precise measurements of the chemical and structural properties of materials.

Automatically generated - may contain errors

56 protocols using avance 500 nmr spectrometer

1

Characterization of Organic Compounds using NMR and HPLC

Check if the same lab product or an alternative is used in the 5 most similar protocols
All chemicals were purchased from Sigma-Aldrich, Acros Chemicals, Fluorochem or Alfa Aesar and used without further purification unless otherwise stated. Anhydrous acetonitrile was obtained from a MBraun SPS800 solvent purification system unless otherwise stated. Flash column chromatography was performed using Biotage Flash Purification system. 1H NMR and 13C NMR spectra were measured on a Bruker Avance 500 NMR spectrometer and Bruker Avance DPX400 spectrometer. 1H NMR and 13C NMR spectra are reported as chemical shifts in ppm downfield from TMS and J values are given in Hertz. 31P NMR spectra were recorded on Bruker Avance DPX400 spectrometer or Bruker Avance 500 NMR spectrometer and are reported in chemical shifts downfield from 85% H3PO4. Reverse phase HPLC was performed on a system comprising of a Dionex P680 pump and a Dionex UVD170U detector unit.
+ Open protocol
+ Expand
2

Spectroscopic Analysis of Host-Guest Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the reagents involved in this research were commercially available and used without further purification unless otherwise noted. Solvents were either employed as purchased or dried before use by standard laboratory procedures. Thin-layer chromatography (TLC) was carried out on 0.25 mm Leyan silica gel plates (60F-254). Column chromatography was performed on silica gel (200-300 mesh) as the stationary phase. 1H, 13C NMR, 2D NMR spectra were performed on Bruker Avance-500 NMR spectrometers. Chemical shifts are reported in ppm with residual solvents or tetramethylsilane (TMS) as the internal standards. The following abbreviations were used for signal multiplicities: s, singlet; d, doublet; dd, doublet of doublet; m, multiplet. Host-guest complexes were prepared by simply mixing the guests and hosts in 1: 1 stoichiometry in the corresponding solvent. Electrospray-ionization high-resolution mass spectrometry (ESI-HRMS) experiments were conducted on an applied Q-EXACTIVE mass spectrometry system. Circular Dichroism (CD) and UV-Vis spectra were recorded on an Applied Photo Physics Chirascan CD spectropolarimeter, using a 1 cm quartz cuvette. Fluorescent spectra were recorded on a spectrofluorometer (Edinburgh FS5), using a 1 cm quartz cuvette. Specific rotations were measured on Rudolph Research Analytical Autopol I Polarimeter (589 nm) in a 1 dm length cell under 25 °C.
+ Open protocol
+ Expand
3

Analytical Techniques for Natural Product Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Optical rotations were measured with a Rudolph Autopol I polarimeter (Rudolph, Hackettstown, NJ, USA). UV spectra were recorded on a Shimadzu UV-2550 spectrometer (Beckman, Kyoto, Japan). ECD spectra were measured on a JASCO J-715 spectrophotometer (JASCO, Tokyo, Japan). IR absorptions were obtained on a Nicolet 380 FT-IR instrument (Thermo, Pittsburgh, PA, USA) using KBr pellets. HRESIMS were determined by an API QSTAR Pulsar mass spectrometer (Bruker, Bremen, Germany) or 6200 series TOF/6500 series (Agilent, Palo Alto, CA, USA). The NMR spectra were recorded on Bruker Avance 500 NMR spectrometers (Bruker, Bremen, Germany), using TMS as an internal standard. HPLC purifications were performed on an analytical reversed-phase column (YMC-packed C18, 250 mm × 10 mm, 5 µm) (YMC, Tokyo, Japan) using a G1311C 1260 Quat Pump VL and detected with a G1315D 1260 DAD VL detector (190–500 nm) (Agilent Technologies 1260 infinity, Palo Alto, CA, USA). Column chromatography was performed with silica gel (60–80, 200–300 mesh, Qingdao Haiyang Chemical Co., Ltd., Qingdao, China), ODS gel (20–45 µm, Fuji Silysia Chemical Co., Ltd., Durham, NC, USA), and Sephadex LH-20 (Merck, Darmstadt, Germany). TLC was carried out on NUSCRIPT silica gel GF254 (Qingdao Haiyang Chemical Co., Ltd., China), and peaks were detected by spraying with 5% H2SO4 in EtOH followed by heating.
+ Open protocol
+ Expand
4

Analytical Techniques for Natural Products

Check if the same lab product or an alternative is used in the 5 most similar protocols
Optical rotations were measured on an Anton Paar MCP 5100 polarimeter. IR spectra were obtained using a Nicolet 380 FT-IR instrument (Thermo, USA) using KBr pellets. HRESIMS were determined by a Waters Autospec Premier (Waters, USA) mass spectrometer. The NMR spectra were recorded on Bruker Avance 500 NMR spectrometers (Bruker, Germany) with TMS as an internal standard. The high performance liquid chromatography (HPLC) was performed with an analytic reversed-phased column (YMC–packed C18, 250 mm × 10 mm, 5 µm) (YMC, Japan) using a G1311C 1260 Quat Pump VL and detected with a G1315D 1260 DAD VL detector (190–500 nm) (Agilent Technologies 1260 infinity, USA). For column chromatography, silica gel (60–80, 200–300 mesh, Qingdao Haiyang Chemical Co., Ltd, China), ODS gel (20–45 µm, Fuji Silysia Chemical Co., Ltd, USA), and Sephadex LH-20 (Merck, Germany) were used. TLC analysis was performed on precoated silica gel GF254 plates (Qingdao Haiyang Chemical Co., Ltd, China), and spots were visualized by spraying with 5% H2SO4 in EtOH followed by heating. Thermo fisher scientific plate reader was used for enzyme inhibition assays.
+ Open protocol
+ Expand
5

Synthesis and Characterization of Calixarene Derivatives

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gereral methods and materials: Compound A--1, [14] mono--5--bromo--tetrapropoxycalix [4]arene, [15] 3--(tert-butyl)--2--hydroxy--5--(4,4,5,5--tetra--methyl--1,3,2-dioxaborolan--2--yl)benzaldehyde, [16] (S)--1-phenylethane--1,2--diamine, [17] and (S)--2--amino--2-phenylacetamine [18] were prepared as reported previously. All others chemicals are commercial available in Aldrich and used as received. 1 H NMR and 13 C NMR spectra were recorded on Bruker Avance 500 NMR spectrometers at 297 K. Chemical shifts are reported in ppm relative to the residual solvent peaks in CDCl 3 (δ = 7.26 ppm) and DMSO--d 6 (δ = 2.50 ppm). Mass analyses were carried out by the High Resolution Mass Spectrometry Unit at the ICIQ in Tarragona, Spain. Elemental analyses were determined by the Elemental Analysis Unit of the University of Santiago de Compostela, Spain. UV/Vis and CD spectra were recorded on an Applied Photophysics Circular Dichroism Chirascan Spectrophotometer using host 1 at 6 × 10 --5 M in DCM, using the following parameters: step--size 2 nm, time-per--point 0.5 s, 3 repeats per sample, T = 24ºC. Further details are mentioned in each respective section provided below.
+ Open protocol
+ Expand
6

Quantitative NMR Analysis of Metabolic Fluxes

Check if the same lab product or an alternative is used in the 5 most similar protocols
NMR samples were run on a Bruker Avance 500 NMR Spectrometer using a 5 mm Broadband BBO probe with z-gradients and ATMA (autotune and match). NMR 5 mm tubes were loaded with 600 µl of homogenate and 20 iu of G6PDH, 99% 13C1-glucose, 2 mM HMP or 5 mM ATP in homogenizing buffer were added as required. Experiments were started with the addition of glucose or G6PDH depending on the experimental requirements. The increased volume of homogenate, and hence enzyme was necessary to account for the lower sensitivity of the 31P NMR assay. The reactions were monitored over 4 h. 13C and 31P NMR spectra were recorded in an interleaved fashion such that blocks of data could be merged with comparable time stamps for comparison. Spectra were recorded fully relaxed using 30° pulses and a 5 s recycling time to satisfy quantitative requirements. 13C and 31P spectra were acquired proton decoupled to maximise sensitivity.
+ Open protocol
+ Expand
7

Proton NMR Relaxation Time Measurements

Check if the same lab product or an alternative is used in the 5 most similar protocols
1H NMR T1 relaxation time measurements were performed
on a Bruker AVANCE 500 NMR spectrometer at 298.2 K. The longitudinal
relaxation time (T1) was determined by
180°–90° inversion recovery pulse sequence. Sixteen
values of delay time (τ) were applied, and 16 scans for each
τ value were recorded. The preacquisition delay (D1) was set to 2 × T1 (5 s) of the
longest relaxation time. The value of the longitudinal relaxation
time was obtained with the help of T1/T2 relaxation module of Topspin as described
in the manual of this software, whereas the fitting function “invec”
and fitting type ‘‘area” were used.
+ Open protocol
+ Expand
8

Isolation and Characterization of Natural Products

Check if the same lab product or an alternative is used in the 5 most similar protocols
HSGF254 silica gel plates (10–40 μm, Yantai, China) were used for TLC analysis. Silica gel (100–200 mesh, Yantai, China), silica gel H (10–40 μm, Qingdao, China), and Sephadex LH-20 (Pharmacia Co., ltd.) were utilized as column chromatography materials. The Shimadzu LC-6AD series equipped with an SPD-20 spectrophotometer using the Shimadzu PRC-ODS EV0233 column was selected as the preparative HPLC. 1D-1H NMR, 13C NMR, and 2D NMR spectra were conducted on the Bruker Avance-500 NMR spectrometer, and chemical shifts are shown in δ (1 × 10−6) with TMS as an internal reference and coupling constants were in Hz. ESIMS spectra were measured on Agilent LC/ MSD Trap XCT spectrometer (Waters, USA) and HR-ESI-MS on Q-TOF micro YA019 mass spectrometer (Waters, USA). Optical rotations were calculated on the JASCO P-2000 polarimeter in MeOH at 20 °C.
+ Open protocol
+ Expand
9

Structure Elucidation of Compounds 1-7 by NMR and MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
Structure elucidation of compounds 1, 2, 6 and 7 was done by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS). NMR was carried out on Avance 500 NMR spectrometer (Bruker, Germany) operating at 25°C. The samples were dissolved in deuterated chloroform (CDCl3) and the chemical shifts were recorded with reference to that of tetramethylsilane δ (0, ppm). Mass spectrometry (MS) was carried out using AmaZon X mass spectrometer for nominal mass (Bruker, Germany). Accurate mass analysis was acquired using MicroTOF-Q II 10269 system (Bruker, Germany). Compound ionization was achieved by electrospray ionization (ESI) in the positive mode. Identification of compounds 3–5 was done through hyphenated gas chromatography mass spectrometry (GC-MS) (Agilent, Germany). Separation was achieved on a HP-5MS column, 30 m × 0.25 μm, 0.25 m, with helium gas as the carrier at a flow rate of 0.5 ml/min. Mass acquisition was performed in the range of 40–550 a.m.u. using electron impact ionization at 70 eV. Compound identity was determined by matching the mass spectra of each compound with the MS data in the National Institute of Standards and Technology (NIST) database. Complete NMR spectra of all seven isolated compounds are provided in S2 Fig.
+ Open protocol
+ Expand
10

Determining ATP-CBP2 Interaction by NMR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Interaction of ATP and CBP2 was also analysed by 1 H nuclear magnetic resonance (NMR). 1 H NMR T1 relaxation time measurements were performed on Bruker Avance 500 NMR spectrometer at 298.2 K. The longitudinal relaxation time (T1) was determined by 180 o -90 o inversion recovery pulse sequence. 16 values of delay time (τ) were applied and 16 scans for each τ value were recorded. The pre-acquisition delay (D1) was set to 2 x T1 (5 s) of the longest relaxation time. The value of the longitudinal relaxation time was obtained with the help of T1/T2 relaxation module of Topspin as described in the manual of this software, whereas the fitting function "invec" and fitting type ''area" was used.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!