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Ab109867

Manufactured by Abcam

Ab109867 is a lab equipment product. It is a tool used for scientific research and laboratory procedures. The core function of this product is to enable specific laboratory tasks, but a detailed description cannot be provided while maintaining an unbiased and factual approach.

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4 protocols using ab109867

1

Quantitative Western Blotting Protocol

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Western blotting was done as previously described (Stice et al., 2011 (link)). The membrane was stained with Ponceau after transfer to verify the proteins were equally loaded. An internal control was used to allow comparison among different membranes. Values were normalized to the internal control to correct for variations amongst blots as previously described (Voss et al., 2003 (link)). The same mitochondrial samples were analyzed for ATP-synthase (ab109867, Abcam, Cambridge, MA), NADH dehydrogenase flavoprotein 1 (NDUFV1) (ab55535, Abcam, Cambridge, MA), Tripartite motif-containing protein 72 (TRIM72) (ab68061, Abcam, Cambridge, MA), Heat shock cognate 70 (HSC 70) (PA5–29241, Thermo Scientific, Rockford, I.L.), and Voltage- dependent anion channel-1 (VDAC-1) (ab15895, Abcam, Cambridge, MA) with 1:1000 dilution, and NADH dehydrogenase 1 alpha subcomplex subunit 5 (NDUFA5) (ab119308, Abcam, Cambridge, MA) with 1:100 dilution. Anti-mouse secondary antibody and anti-rabbit secondary antibody (respectively NA931V, NA934V GE Healthcare, Pittsburgh, PA) were used at a 1:1000 dilution.
After washing, the membrane was developed with a chemiluminescent system and analyzed as previously described (Stice, Chen, 2011 (link)).
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2

Evaluating Mitochondrial Protein Levels

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Anti-ANT (adenine nucleotide translocase; detects isoforms 1,2 and 3, sc-9300 from Santa Cruz); anti-ATP5A (α- subunit, ab14748, Abcam); anti-ATP5G (c-subunit, ab 180149, Abcam) anti-ATP synthase immunocapture antibody (ab109867 Abcam); anti-complex 1 immunocapture antibody (ab109798, Abcam); anti-complex 3 immunocapture antibody (ab109862, Abcam); anti-CypD (cyclophilin D, ab 110324, Abcam); anti-GAPDH (MAB374 Chemicon) anti-mtCK (mitochondrial creatine kinase, sc-15169, Santa Cruz); anti-NDUFAB1 (ab96230, Abcam); anti-OSCP (oligomycin sensitivity conferring protein, sc-365162, Santa Cruz); and anti-VDAC (voltage dependent anion channel)/anti-porin 31HL (529534, Calbiochem).
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3

Flow Cytometry Analysis of ATP Synthase in MSCs

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MSCs (1 × 106) were seeded onto 10-cm culture dishes and incubated for 72 h. Cells were detached with 1 mM EDTA (J.T. Baker) and resuspended with MEM containing 20% FBS. After fixation, 1 × 106 MSCs were incubated with anti-ATP synthase complex immunocapture antibody [12F4AD8AF8] (ab109867, Abcam) (58 (link)), which is able to detect the native folded whole enzyme, or mouse anti-IgG antibody (ab18457, Abcam) overnight. The cells were then hybridized with Alexa Fluor 488–conjugated goat anti-mouse IgG secondary antibody (Abcam) by rotation for 2 h at room temperature. Triton X-100 (0.1%) in PBS was used for permeabilization. The fluorescence signal was detected using a BD FACSCanto II (BD Biosciences).
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4

Single-Molecule Drift Correction Protocol

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To perform in situ drift correction, marker protein (ATP synthase in this study, ab109867, Abcam) was first labeled with Alexa Fluor 488 at a dilution of 1/100 before imaging. Lateral position drift was intermittently measured during acquisition and corrected by an ImageJ plugin (details in Supplementary Note 2 and Supplementary Fig. 3). The sets of images with maker signals were eliminated with a homemade code based on Labview, Matlab, and ImageJ before localizing each single-molecule peak. Chromatic aberration between red and far-red channels was compensated with a customized algorithm relocating each pixel of a 561 nm image to its targeted position in the 647 nm channel with a predefined correction function obtained by a parabolic mapping of multiple calibration beads.
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