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New brunswick innova 44

Manufactured by Eppendorf
Sourced in Germany, United States

The New Brunswick Innova 44 is a benchtop incubator shaker designed for cell culture and microbial applications. It provides precise temperature and shaking control to ensure optimal growth conditions for a variety of samples.

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12 protocols using new brunswick innova 44

1

Purification of Nuo Enzyme Variants

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BW25113Δndh nuo::ntpII FRT (Burschel et al., 2019 (link)) was transformed either with pBADnuohisnuoF containing the nuo-operon encoding the wild type enzyme decorated with a His-tag or with pBADnuoHisnuoF D213GH encoding the variant. Cells were grown in autoinduction medium while shaking (180 rpm, New Brunswick Innova 44, Eppendorf). At an OD600 of ~4.0 cells were harvested by centrifugation (3,913 · g, 15 min, 4°C; JLA 8.1000, Avanti J-26 XP, Beckman Coulter), shock frozen in liquid nitrogen and stored at −80°C.
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2

Bacterial Pre-culture Preparation

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The first pre-culture was prepared by inoculating 20 mL LB medium (5 g/L tryptone, 10 g/L NaCl, 10 g/L yeast extract) with 100 µL of the respective glycerol stock in a 100 mL baffled shake flask. The shake flasks were incubated at 120 rpm and 30 °C for 24 h in an incubator shaker (Newbrunswick™/Innova® 44, Eppendorf AG, Hamburg, Germany). The second pre-culture was prepared in 250 mL baffled shake flasks by diluting the respective LB-pre-culture each 1:10 and 1:20 in a final volume of 50 mL aerobic mineral salt medium. These pre-cultures were incubated for another 12 h and 24 h for the 1:10 and 1:20-dilutions, respectively.
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3

Scaled-up Production of β-Glucosidase

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The optimised parameters from the statistically designed experiments were implemented for the scaled-up production of β-glucosidase. The minimal medium was prepared as described in Section 3.2 and supplemented with the optimised soy peptone and wheat bran concentrations. In total, 500 mL of medium was prepared in 2 L Erlenmeyer flasks, inoculated with 20 5 mm fungal plugs (5-day old fungal mycelium), and incubated at the optimised parameters in a shaker (Eppendorf, New Brunswick Innova 44, Gemiston, South Africa). After incubation, the mycelia-free supernatant was recovered by centrifuging the cultured medium at 16,873× g for 10 min (Eppendorf centrifuge 5418, Gemiston, South Africa). The β-glucosidase activity was determined as described in Section 3.3.
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4

Biomass Production Using Shake-Flask Cultivation

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Biomass production was conducted using shake-flask cultivation in 25 mL stoppered conical flasks. The cultivation medium included: 1.5 g L−1 (NH4)2SO4, 0.2 g L−1 MgSO4·7H2O, 2.5 g L−1 NaCl, 1.5 g L−1 KH2PO4, and 1.5 mL L−1 trace element solution. The concentration of yeast extract and glucose-rich hydrolyzate and the medium pH were varied as per the model design (Table 2). All flasks were incubated at 37 °C in an orbital shaker (New Brunswick Innova 44, Eppendorf) at 200 rpm for the relevant times (Table 2). After incubation, a 1 mL aliquot was aspirated, and cell density was recorded as the optical density at 600 nm (OD600) using a spectrophotometer (Varian Cary 60 UV/Vis spectrophotometer; Agilent Technologies) against a blank of the 1 mL respective uninoculated cultivation medium.
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5

Bacterial Cultivation and Optical Calibration

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R. solanacearum isolates were propagated in liquid YPG broth and incubated for four days at 28 °C on a rotary shaker (New Brunswick Innova 44, Eppendorf, USA) at 150 rpm. Subsequently, the cultures were centrifuged at 10 °C for 10 min at 10,000 rpm using a centrifuge (Rotina 380 R, Hettich, Tuttlingen, Germany). The resulting bacterial pellets were optically calibrated to 108 CFU/mL and suspended in distilled water. Measurements were taken using a spectrophotometer (BioSpec-mini, Shimadzu, Kyoto, Japan) at an optical density (OD) of 600.
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6

In vitro Digestion of Sea Buckthorn Oil

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An aliquot of 0.1 g sea buckthorn oil (1 g oil-in-water emulsion) in 6.15 mL water was combined with 4 mL of simulated gastric fluid (SGF), 1 mL of porcine pepsin solution in SGF (2000 U/mL in final digestion mixture) and 31 μL of CaCl2 (0.03 M). HCl (1 M) was added to reduce the pH to 3.0 and water was added to a final volume of 12.5 mL. The mixture was homogenized and incubated at 37 °C for 2 h (95 rpm) in a shaking incubator (New Brunswick Innova 44, Eppendorf AG, Hamburg, Germany).
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7

Polymer-based Gastric Resident Dosage Form

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We tested the release of meloxicam from a variety of polymer-based matrices molded in the shape of arms for the solid arm dosage form or v-shaped arm dosage form. In both cases, drug-loaded polymer matrices were cast as arms as described in the previous section. For the in vitro drug release studies, only the drug-loaded arms were used, not the entire gastric resident dosage form.
To perform the drug release study, drug-loaded arms were placed in 20 mL SGF containing 3% Kollidon RH 40 in an incubator shaker at 150 RPM and 37 °C (New Brunswick Innova 44, Eppendorf, USA). At various times, a part of the release medium was collected and stored at −20 °C until further analysis. At the end of the study, the samples were thawed and analyzed using HPLC.
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8

Methanol Metabolism in Bacterial Growth

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Bacterial growth time of the preinoculum added to all flasks was 40 h using a methanol concentration of 5.0 g/L. The inoculum was centrifuged at 10 956×g for 20 min, the supernatant was removed and the cells were resuspended in a mineral medium. These aliquots were centrifuged, then the supernatant was removed (residual methanol was sent for analysis) and the pellets were resuspended in 2 mL of distilled water for absorbance measurement at 600 nm in a spectrophotometer (UV-1800; Shimadzu, Kyoto, Japan). Growth assays were started by mixing 10 mL of the activated inoculum of the bacterial suspension with 190 mL of mineral medium (φ=5%) containing methanol concentrations of 1, 4, 7, 12 and 18 g/L in 500-mL conical flasks. The bacterial cultures were incubated at 30 °C and 4×g on a rotary shaker, for 84 h (New Brunswick™ Innova 44®; Eppendorf, Enfield, CT, USA).
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9

Recombinant E. coli Protein Expression

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E. coli BL21 (DE3) harboring pRhaBAD-GmSuSy_Trc-YjiC or pRhaBAD-GmSuSy_YjiC plasmid was grown overnight in a 100-mL Erlenmeyer flask containing 30 mL of LB supplemented with 50 mg/L gentamicin in an incubator shaker (New Brunswick Innova 44, Eppendorf, Vienna, Austria) at 37 °C and 120 rpm agitation. The next day, 500 mL of TB containing 50 mg/L gentamicin was inoculated with 10% (v/v) of overnight preculture and incubated in a baffled 2 L shaken flask at 37 °C and 120 rpm agitation until an OD600 reached around 0.6–0.8 value. Protein expression was then induced by the addition of 10 mM of L-rhamnose and 1 mM of IPTG (pRhaBAD-GmSuSy_Trc-YjiC) or 25 mM of L-rhamnose (pRhaBAD-GmSuSy_YjiC). Expression and sonication was performed as described above in the enzyme expression screening section. The cell lysate was then recovered by centrifugation (14000 g, 30 min, 4 °C) and stored at 4 °C.
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10

Cultivation of Rhodococcus erythropolis

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R. erythropolis JCM3201T (DSM No. 43066, German Collection of Micro-Organisms and Cell Cultures GmbH, Braunschweig, Germany) was maintained using Luria–Bertani (LB) agar plates (10 g L−1 of peptone, 5 g L−1 of yeast extract, 10 g L−1 of sodium chloride, and 14 g L−1 of agar). For inoculum, single colonies were cultured in 500-milliliter baffled shake flasks holding 100 mL of LB medium at 120 rpm (New Brunswick InnovaTM 44, Eppendorf, Hamburg, Germany) for 48 h. Afterward, the inoculum was transferred to prospective optimization media.
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