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5 primestar gxl buffer

Manufactured by Takara Bio
Sourced in Japan, China

The 5×PrimeSTAR GXL buffer is a concentrated buffer solution designed for use with the PrimeSTAR GXL DNA Polymerase. It provides the necessary ionic conditions and pH for optimal enzyme activity during PCR amplification.

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2 protocols using 5 primestar gxl buffer

1

Sanger Sequencing of ALPL Gene

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ALPL gene analysis was performed with informed consent. DNA was extracted from peripheral blood samples and sequenced using the Sanger method to screen for genetic variations at the nucleotide level throughout all coding exons of the ALPL gene. We used the UCSC genome browser (http://genome-asia.ucsc.edu/human GRCh38/hg38) as the human genome assembly. PCR was carried out in a 10 μL volume containing 5.7 μL of distilled water, 2 μL of 5☓PrimeSTAR GXL buffer (TaKaRa, Japan), 0.2 μL of each primer (10 μM), 0.1 μL of PrimeSTAR GXL DNA polymerase (TaKaRa, Japan), and 1 μL of template DNA (20 ng/μL). The primer sequences are listed in the Online Supplementary Table. PCR amplifications were performed using a DNA thermal cycler (Applied Biosystems) under the following cycling conditions: initial denaturation at 94 °C for 2.5 min followed by 35 cycles at 98 °C for 10s, 60 °C for 15 s and 68 °C for 45 s. The PCR products were sequenced using a standard Sanger method. The ALPL sequence from the HPP patients was compared to control subjects and the reference ALPL sequence (Ref Seq NM_000478.5). Allele frequencies were investigated via gnomAD browser beta (http://gnomad.broadinstitute.org/). In silico analysis was performed using PolyPhen and SIFT.
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2

Cloning of SVSP454 from T. annulata

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The fragment of the target gene was amplified with PCR from the cDNA of T. annulata-infected cells. The specific primers were designed based on the reference sequence of SVSP950454 (Accession No: XM950454, SVSP454), and the nucleotide sequences were: SVSP454-F (5′-CCGGAATTCATGAATAAATATATAACATAT-3′) and SVSP454-R (5′-TGCACTGCAGATCCTCCGATTTATCATATTT-3′) with the restriction site underlined. The final volume of PCR reaction was 50 μL, which contained 10 μL 5× PrimeSTAR GXL Buffer (TaKaRa, Dalian, China), 4 μL dNTP Mixture (2.5 mM), 20 μM of each primer, 1 μL PrimeSTAR GXL DNA Polymerase (TaKaRa, Dalian, China), 4 μL of cDNA template, and 17 μL ddH2O. The protocol of PCR reactions was performed as follows: 35 cycles of denaturation (98 °C for 10 s, 50 °C for 15 s, 68 °C for 20 s) and the final extension at 68 °C for 10 min. The PCR products were purified by using a Cycle-Pure Kit (OMEGA Bio-Tek, USA), which was followed by digestion with restriction enzymes EcoRI and PstI (Thermo Fisher Scientific, #FD0274 and #FD0614). The products were then ligated to the pGBKT7 plasmid, which was digested with the same enzymes as previously described. Finally, the recombinant SVSP454-pGBKT7 plasmid was further identified using double restriction enzyme digestion and sequencing (Sangon Biotech, Shanghai, China), and only the positive plasmid was used as the bait plasmid for further experiments.
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