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4 protocols using torin 1

1

Modulating NK Cell Activation Pathways

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NK cells were cultured in medium or with 200 U/ml IL-2 for 5, 10, 15, 20, or 24 h at 37°C and 5% CO2 prior to stimulation. Where indicated, the following inhibitors were added to cells 1 hr prior to stimulation: 10 mM L-glutamic acid γ-(p-nitroanilide) hydrochloride (GPNA) (Santa Cruz Biotechnology) (1M GPNA solution was prepared in DMSO and kept at 37°C immediately prior to its addition), 100 mM D-phenylalanine (Sigma-Aldrich) (dissolved in medium for 1 h at 37°C by vortexing every 5-10 min prior to addition); 100 nM rapamycin (Calbiochem) (109.4 μM rapamycin in DMSO stock was stored at -20° C, thawed, and diluted in medium prior to addition); 100 nM Torin-1 (ApexBio) (1.645 mM Torin-1 in DMSO stock was stored at -80°C, thawed, and diluted in medium before addition). Nunc maxisorp ELISA plates (Thermo Fisher Scientific) were washed twice with PBS and then coated with 5 μg/ml anti-NKG2D mAb (1D11, BioLegend) or 5 μg/ml control mouse IgG1 (MOPC-21, UCSF Monoclonal Antibody Core) in PBS for 24 h at 4°C. After coating, the plates were washed twice with PBS and blocked in complete medium for 10 min at room temperature (RT). For IFNγ measurements, GolgiSTOP was added to cells immediately prior to stimulation. Stimulation of 1.5 × 105 cells/well proceeded for 5 h at 37°C and 5% CO2.
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2

Generation of Knockout Cell Lines

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SLC7A11-KO, LAMP2 KO, 4EBP1/2 DKO, and RagA/B DKO cell lines were generated using CRISPR/Cas9 technology as previously described58 (link). In brief, the sgRNAs were cloned into the lentiviral lentiCRISPR v2 vector. All constructs were confirmed by DNA sequencing. pGIPZ-shRNAs against GPX4 were obtained from the Functional Genomics Core at The University of Texas MD Anderson Cancer Center. The sequences of the primers used in PCR mutagenesis, gRNAs, and shRNAs used in this study are listed in Supplementary Table 3. pLenti-SLC7A11-V5 construct was generated as described in our previous publications24 (link),59 (link). pcDNA-flag-GPX4 expression plasmid was a gift from Dr. Aikseng Ooi at The University of Arizona Health Sciences60 (link). pCW57.1-4EBP1 4 A construct was obtained from Addgene (#38240). Other reagents were purchased as follows: Erastin (E7781), ferrostatin-1 (SML0583), deferoxamine mesylate salt (DFO, D9533), GSHEE (G1404), MG132 (M7449), chloroquine diphosphate (C6628), and doxycycline (D9891) were obtained from Sigma. Torin1 was obtained from ApexBio (A8312). AZD8055 (S1555) and Salubrinal (S2923) were obtained from Selleckchem. IKE was obtained from MedchemExpress (HY-114481).
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Preparation of Rapamycin, Torin-1, and Standards

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Rapamycin (Sigma-Aldrich) and Torin-1 (ApexBio) were prepared at 100uM and 250uM respectively in dimethyl sulfoxide (DMSO). Standards for LC-MS flux analysis that were not present in DMEM include: Lactic acid (Acros Organics), L-glutamic acid (Sigma-Aldrich), L-alanine (VWR), L-ornithine (Alfa Aesar) and L-proline (Alfa Aesar), which were prepared in OmniSolv Water (MilliporeSigma) at 710 mM, 16 mM, 16 mM, 0.5mM and 8mM respectively.
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4

HIF-1α Regulation of Glycolysis

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All chemicals were purchased from Sigma-Aldrich, unless indicated otherwise. Rabbit polyclonal antibody against HIF-1α was obtained from (Novus Biologicals, Littleton, CO, USA, #NB100–449), while phosphorylated mTOR S2448, β-actin, α-Tubulin, as well as Glycolysis Antibody Sampler Kit to detect Pfkp, Pkm2, Pkm 1/2, Hexokinase 1, Hexokinase 2 and Pdh were all obtained from (Cell Signaling Technology, Beverly, MA, USA, #2971, #4970, #2148, #8337 respectively). Secondary antibodies consisted of horseradish peroxidase conjugated goat anti-rabbit IgG (Agilent’s Dako, Glostrup, Denmark). Torin 1, LY294002 and Forskolin were purchased from (ApexBio, Houston, TX, USA). ON-TARGETplus Rat Hif1a siRNA – SMARTpool (siHif1a) and Non-targeting Pool siRNA (siControl) were purchased from (Dharmacon, Lafayette, CO, USA - L-091718-02 and D-001810-10-05, respectively).
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