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10 protocols using bs 1165r

1

Protein Expression Analysis in Kidney Tissue

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Total protein from the kidney tissue and NRK-52E cells was obtained with a protein extraction kit (Solarbio, Beijing, China) as directed by the manufacturer. Sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) was performed to separate proteins (50 μg/well). When bromophenol blue ran to the bottom of the gel, proteins were transferred onto polyvinylidene fluoride (PVDF) membranes. Blocking was carried out with 5% skim milk. The membranes were then washed with TBST three times for 10 min and subjected to incubation with the following antibodies overnight: β-catenin (1:500, bs-1165R, Bioss), Sfrp1 (1:500, bs-1303R, Bioss), p-GSK3βser9 (1:500, sc-373800, Santa Cruz), E-cadherin (1:500, bs-10009R, Bioss), and α-SMA (1:500, 55135-1-AP, Proteintech), collagen IV (col-IV) (1:1000, SAB4200500, Sigma), β-actin (1:4000, Lot:181620, Pumei), and GSK3β (1:500, sc-8257, Santa Cruz). The next day, the membranes underwent three TBST washes of 10 min. Secondary antibodies diluted with 1% skim milk were added to the membranes for 1 h at room temperature. Band intensities were assessed by Image Lab software.
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2

Protein Expression Analysis by Western Blot

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Protein samples collection was performed using RIPA buffer (KeyGen, Shanghia, China) on ice for 15 min. Total protein contents were quantified by an Enhanced BCA Protein Assay Kit (Beyotime, Beijing, China). Aliquots of protein were loaded onto 10% SDS-PAGE gel, followed by transfer onto PVDF membranes (Millipore, Darmstadt, Germany). The membranes were subjected to blocking using 5% bovine serum albumin (BSA) for 1 h. The incubation with primary antibodies was performed at 4 °C overnight: cleaved caspase-3 (1:2000, Abcam, ab2302), Bcl-2 (1:2000; Abcam, ab59348), FZD4 (1:1500; Bioss, bs-13217R), β-catenin (1:1500; Bioss, bs-1165R), non-phospho (Active) β-catenin (1:1000; Cell Signaling Technologies, 8814), cyclin D1 (1:2000; Abcam, ab134175), c-Myc (1:1500; Abcam, ab190026), or GAPDH (1:5000; Bioss, bs-2188R). The next day, the membranes were washed 4 times with TBST buffer and then further labeled with HRP-linked secondary antibody (1:10000; Invitrogen, 61–6520) for 1 h at room temperature. After rinsing for 4 times signal development was conducted using a chemiluminescence kit (Santa Cruz, TX, USA), and the protein bands were photographed under a gel imager (Biorad, CA, USA).
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3

Western Blot Protein Expression Analysis

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The RIPA buffer (P0013 B, Beyotime) was used to extract proteins by lysing cells and tissues. The SDS-PAGE gel was used to separate the proteins. The proteins were transferred to the nitrocellulose membrane. 5% skimmed milk was used to block the membrane at 4°C overnight. The membranes were incubated with primary antibodies or secondary antibodies at room temperature (RT) for 90 min. The antibodies used were as follows: anti-β-actin (1 : 5000, 66009-1-Ig, proteintech), anti-PCNA (1 : 2000, 10205-1-AP, proteintech), anti-Ki67 (1 : 1000, 27309-1-AP, proteintech), anti-cleaved caspase 3 (1 : 1000, 9664S, CST), anti-caspase 9 (1 : 500, bs-20773R, Bioss Antibodies), anti-Bax (1 : 1000, ab32503, abcam), anti-Bcl-2 (1 : 1000, 12789-1-AP, proteintech), anti-E-cadherin (1 : 1000, 20874-1-AP, proteintech), anti-β-catenin (1 : 1000, bs-1165R, Bioss Antibodies), anti- N-cadherin (1 : 2000, 22018-1-AP, proteintech), anti-vimentin (1 : 2000, 10366-1-AP, proteintech), anti-Snail (1 : 1000, 13099-1-AP, proteintech), anti-Slug (1 : 1000, #9585, CST), HRP goat anti-mouse IgG (1 : 5000, SA00001-1, proteintech), and HRP goat anti-rabbit IgG (1 : 6000, SA00001-2, proteintech). Proteins were detected by Western Bright ECL kit (K-12045-D50, advansta). The expression of β-actin was applied as control.
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4

Western Blot Analysis of NF-kB Pathway

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Expression of NF-kB p50, P65, MARCH7, E-cadherin and beta catenin protein was analyzed by the Western blot method [9 ]. The primary antibodies used included polyclonal rabbit anti-MARCH7 (1:1000; ab84130; Abcam Inc., Cambridge, MA, USA); polyclonal rabbit anti-NF-kB p65 (1:1000; ab7970; Abcam Inc., Cambridge, MA, USA); polyclonal rabbit anti-NF-kB p50 (1:1000; ab7971; Abcam Inc., Cambridge, MA, USA); anti-beta catenin antibody rabbit polyclonal antibody (1:500, bs-1165R, Bioss, Beijing, China) and polyclonal rabbit anti-GAPDH (1:1000; AB10016; Sangon Biotech, Shanghai, China). The band density was analyzed using a gel imaging system and compared against an internal control.
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5

Quantitative Protein Analysis by Western Blot

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Total protein was extracted using cell lysis buffer, and the protein concentration was determined using the BCA assay (both from Beyotime). Protein (100 µg) was subjected to SDS-PAGE, and then transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA). The membranes were blocked for 2 h in 5% skimmed milk (Difco Laboratories, Detroit, MI, USA). Then, a membrane was incubated with the primary antibodies, including polyclonal rabbit anti-MARCH1 antibody (1:200; bs-9335R; Bioss), polyclonal rabbit anti-NF-κB p65 (1:1,000; ab7970), polyclonal rabbit anti-NF-κB p50 (1:1,000; ab7971) (both from Abcam Inc., Cambridge, MA, USA), polyclonal rabbit anti-β-catenin antibody (1:500; bs-1165R; Bioss), polyclonal rabbit anti-Histone H1, and polyclonal rabbit anti-E-cadherin antibody, overnight at 4°C. The membrane was incubated with the HRP-conjugated secondary antibody for 2 h. GAPDH was detected with a polyclonal antibody and served as the reference (1:1,000; AB10016; Sangon Biotech, Shanghai, China). Proteins were visualized with the ECL system (Beyotime) using the ChemiDoc XRS system (Bio-Rad).
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6

Kidney Specimen Staining and Quantification

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Paraffin-embedding of kidney specimens and sectioning were performed via standardized procedures. The resulting sections underwent staining with periodic acid-Schiff (G1360; Solarbio, China) and Sirius red staining (BB-44333; BestBio, China) reagents according to respective recommended protocols. Immunohistochemical staining was carried out using a Two Step Immunoassay assay kit (ZSBIO, China), as directed by the manufacturer. The antibodies used included rabbit monoclonal anti-CDX2 (YM3057; Immunoway Bio, USA), mouse monoclonal anti-CFTR (sc-376683; Santa Cruz, USA), and rabbit polyclonal anti-β-catenin (bs-1165R; Bioss, Beijing, China). Areas of positive staining were quantified by ImageJ in 6 random fields (200×) per sample, with three individuals assessed in each group.
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7

Immunohistochemical Analysis of Knee Joints

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Frontal sections of paraffinized knees joints were used for immunohistochemical analysis. Sections were deparaffinized and re-hydrated as previously described (24) . Primary antibodies used for immunolabelling are as follows: goat polyclonal Sox9 (AF-3075, R&D Systems), rabbit monoclonal GSK3alpha (ab40870, Abcam), rabbit polyclonal GSK3beta (12456S, Cell Signaling Technologies), mouse monoclonal type II collagen (Col2; 10R-C135b, Fitzgerald), rabbit polyclonal osteocalcin (ab93876, Abcam), rabbit polyclonal beta-catenin (bs-1165R, Bioss Antibodies) and rabbit polyclonal GLI1 (PA5-72942, Invitrogen, Thermo Fisher). Frontal sections without primary antibody were used as controls. Sections were incubated with was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint (which this version posted April 7, 2020. ; https://doi.org/10.1101/2020.04.04.025700 doi: bioRxiv preprint respective HRP-conjugated anti-goat, anti-mouse and anti-rabbit IgG, and labelled proteins were probed with diaminobenzidine substrate (K3468, Dako) to reveal positive staining, followed by counterstaining in Methyl Green.
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8

Immunohistochemistry and Immunofluorescence Analysis

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For immunohistochemistry, a two-step immunoassay kit (ZSBIO, Beijing, China) was used for streptavidin-peroxidase (SP) detection. For immunofluorescence, NRK-52E cells were grown in 12-well plates, stimulated with normal or high glucose, and transfected with miR-27a inhibitor, miR-27a inhibitor negative control, si-sfrp1, and combined miR-27a inhibitor and si-sfrp1. After treatment for 48 h, the cells underwent fixation (4% formalin at room temperature, 20 min), permeabilization (0.1-0.3% Triton X-100, 10 min), and blocking (3% BSA at 37°C, 30 min). Next, sfrp1 antibody (1:50; bs-1303R, Bioss), β-catenin antibody (1:50; bs-1165R, Bioss), E-cadherin antibody (1:50; bs-10009R, Bioss), α-SMA antibody (1:50; 55135-1-ap, Proteintech), and col-IV antibody (1:50; SAB4200500, Sigma) were added for overnight incubation at 4°C. The cells were then rinsed with ice-cold PBS, and the corresponding fluorescent secondary antibodies were added for incubation (37°C, 1 h). DAPI staining was performed for 5 min, and the cells were observed under an immunofluorescence microscope (Leica, DM4000B, Germany).
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9

Western Blot Analysis of E-cadherin and β-catenin

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For Western blot experiments, 1 × 106 cells were seeded into six-well plates. The coculture and treatment were the same as described above. Then the total proteins were extracted with RIPA buffer containing 1% PMSF and detected with Brasford assay. Proteins of different sizes were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Afterward, proteins were transferred onto a 0.22-μm PVDF membrane and incubated with Tris buffer containing 5% nonfat milk, which was further incubated with primary antibodies, including E-cadherin (#bs-1519R, 1:1,000, Bioss) and β-catenin (#bs-1165R, 1:1,000, Bioss), and secondary antibody (#bs-40295G-HRP, 1:5,000, Bioss) for 12 and 1 h, respectively. Subsequently, the expression of proteins was analyzed using the chemiluminescence analysis system and ImageJ 1.43 software. GAPDH (#bs-10900R, 1:5,000, Bioss) was used as a control for whole-cell lysates. All experiments were performed in triplicate.
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10

Immunohistochemical Analysis of Knee Joints

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Frontal sections of paraffinized knees joints were used for immunohistochemical analysis. Sections were deparaffinized and re-hydrated as previously described (24) . Primary antibodies used for immunolabelling are as follows: goat polyclonal Sox9 (AF-3075, R&D Systems), rabbit monoclonal GSK3alpha (ab40870, Abcam), rabbit polyclonal GSK3beta (12456S, Cell Signaling Technologies), mouse monoclonal type II collagen (Col2; 10R-C135b, Fitzgerald), rabbit polyclonal osteocalcin (ab93876, Abcam), rabbit polyclonal beta-catenin (bs-1165R, Bioss Antibodies) and rabbit polyclonal GLI1 (PA5-72942, Invitrogen, Thermo Fisher). Frontal sections without primary antibody were used as controls. Sections were incubated with was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint (which this version posted April 7, 2020. ; https://doi.org/10.1101/2020.04.04.025700 doi: bioRxiv preprint respective HRP-conjugated anti-goat, anti-mouse and anti-rabbit IgG, and labelled proteins were probed with diaminobenzidine substrate (K3468, Dako) to reveal positive staining, followed by counterstaining in Methyl Green.
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