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7 protocols using anti sca 1 pe

1

Characterizing OC Stem Cell Markers

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Primary isolated OC were cultured in vitro and passaged for about 6-8 times. The OCs were harvested and then incubated with anti-EpCAM-APC, anti-Sca-1-PE, anti-CD44-PE, anti-CD49f-APC, anti-CD45-APC, anti-CD34-PE, anti-c-kit-FITC, anti-α6 integrin-APC, anti-β1 integrin-PercpCy5.5, anti-β4 integrin-PercpCy5.5 (all from ebioscience, San Diego, CA) at 4°C for 30 mins, after that, cells were fixed with 1% paraformaldehyde and analyzed by a BD Calibur (Becton, Dickinson and Company, New Jersey) and Flowjo software (Tree Star, San Carlos, CA).
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2

Comprehensive Immune Cell Phenotyping

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Cells were incubated on ice for 45 min in Fc block in the presence of relevant primary antibodies. The anti-CD11c FITC, anti-CD11b PE, anti-CD103 PECy5, anti-MHCII APC-efluor780, anti-F4/80 efluor450, anti-CD45 BV510, anti-CX3CR1 PECy7, anti-Sca1 PE, anti-CD16/32 PerCP, anti-CD34 efluor450, anti-B220 FITC, anti-Gr1 FITC, anti-Ter119 FITC, anti-CD3 FITC, and anti-CD127 APC were purchased from eBioscience. The anti-CD11b PE, anti-CD11c APC, anti-Ly6C FITC, anti-CD117 PECy7 and anti-CD43 PerCP were purchased from BD Bioscience. After staining, cells were analyzed by flow cytometry on a FACS Canto. Data were analyzed with the FlowJo software.
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3

Immunophenotyping of Hematopoietic Cells

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Cell suspensions were incubated for 5 minutes with 10% rat serum (MP Biomedicals) and 0.2% BSA (Roche) in PBS, then stained for 30 minutes at 4°C with biotinylated lineage markers (Mac1, Gr1, CD4, CD8, B220, Ter119, IL7Rα, CD19, and CD3 with streptavidin PerCPcy5.5 as secondary), anti-Sca1-PE, anti-cKit-APC, anti-Gr1-FITC, anti-Mac1-APC, biotinylated anti-CD4 and anti-CD8 (with streptavidin APC as secondary), and/or anti-B220-PE (eBioscience and BD Biosciences). The analyzer used for flow cytometry was the BD LSR II and data was analyzed using CellQuest.
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4

Isolation and Analysis of Mouse Hematopoietic Stem Cells

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Cells were analyzed using LRSII (BD, Pharmingen) and sorted using FACS-ARIA II (BD, Pharmingen). The following antibodies were used: anti-CD45 FITC (clone 30-F11 Biolegend), anti-CD31 FITC (clone MEC13.3 Biolegend), anti-Ter119 FITC (clone TER-119 Biolegend), anti-Sca1 Pacific Blue (clone D7 Biolegend), anti-CD51 PE (clone RMV-7 Biolegend), bio-Lineage panel antibodies [CD4 (clone GK1.5 eBioscience), CD8 (clone 53-6.7 eBioscience), CD3 (clone 145-2C11 eBioscience), Ter119 (clone TER-119 eBioscience), CD11b (clone M1/70 eBioscience), Gr1 (clone RB6-8C5 eBioscience), NK1.1 (clone PK136 eBioscience), B220 (clone RA3-6B2 eBioscience)], anti-ckit APC (clone 2B8 eBioscience), anti-Sca1 PE (clone D7 eBioscience), anti-CD34 FITC (clone RAM-34 eBioscience), anti-SLAM (CD150) PerCP cy5.5 (clone TEC15-12F12.2 Biolegend), anti-Cd11b APC (clone M1/70 Biolegend), and anti-Gr1 PE (clone RB6-8C5 Biolegend).
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5

Isolation of Primary Myoblasts from Mouse Skeletal Muscle

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TA muscle was harvested, and satellite cell-derived primary myoblasts were isolated as described previously (Motohashi et al., 2014 ). Briefly, TA muscles of MyoD−/− mice or their wild-type littermates were dissected and minced and then digested in type I collagenase/dispase B mixture (Roche Applied Science). The digestions were filtered from debris for magnetic-activated cell sorting (MACS). Dissociated muscle cells were incubated with Anti-CD45-PE, anti-Sca-1-PE and anti-CD31-PE antibodies (all from eBiosciences) followed by anti-PE beads (Miltenyi Biotec). LD column (Miltenyi Biotec) was used for negative selection to eliminate hematopoietic cells, endothelial cells and other non-muscle cells from the muscle preparation. Flow through fraction was incubated with integrin α-biotin antibody (Miltenyi Biotec) followed by anti-biotin beads (Miltenyi Biotec). MS column (Miltenyi Biotec) was used for primary myoblast isolation as a positive fraction. Isolated primary myoblasts were cultured in growth media (F-10 Ham's media supplemented with 17% FBS, 4 ng/ml basic fibroblast growth factor and 1% penicillin-streptomycin) on collagen-coated dishes, and the growth medium was changed every two days. Primary myoblasts were cultured in normal humidified tissue culture incubators with 5% CO2.
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6

Hematopoietic Stem Cell Immunophenotyping

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Cell suspensions were incubated for 5 minutes with 10% rat serum (MP Biomedicals) and 0.2% BSA (Roche) in PBS, then stained for 30 minutes at 4°C with biotinylated lineage markers (Mac1, Gr1, CD4, CD8, B220, Ter119, IL7Rα, CD19, and CD3 with streptavidin PerCPcy5.5 as secondary), anti-Sca1-PE, anti-cKit-APC, anti-CD34-FITC, anti-CD16/32-PEcy7, anti-Gr1-FITC, anti-Mac1-APC, biotinylated anti-CD4 and anti-CD8 (with streptavidin APC as secondary), anti-B220-PE, anti-CD71-PE, and/or anti-CD36-APC (eBioscience and BD Biosciences). The analyzer used for flow cytometry was the BD LSR II and data was analyzed using CellQuest.
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7

Isolation and Characterization of Mesenchymal Stem Cells from Murine Bones

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MSCs were isolated from the femurs and tibias of mice. Briefly, the femurs and tibias were flushed with pre-cold phosphate-buffered saline (PBS) until they turned white. Thereafter, the cell suspension was passed through a 70-μm cullender (Falcon, Corning, NY) to obtain MSCs. The obtained MSCs were cultured for 3 days in 100-mm culture dishes with low-glucose Dulbecco’s modified Eagle’s medium (Hyclone, Waltham, MA) containing 10% fetal bovine serum and 1% 100 U/mL penicillin and 100 μg/mL streptomycin (Gibco, Waltham, MA) in an incubator. The non-adherent cells were discarded, and MSCs were trypsinized to obtain plastic-adherent cells. MSCs in the fourth through tenth passages were used in the subsequent experiments. They were identified by fluorescence-activated cell sorting (FACS) using anti-CD29-FITC, anti-Sca-1-PE, anti-CD105-PE, anti-CD90-FITC, anti-CD45-FITC, anti-CD11b-PE, anti-CD34-PE, and anti-CD80-PE antibodies (eBioscience, Waltham, MA).
MSCs were treated with 1 nM TCDD (AccuStandard, New Haven, CT) for 24 h to activate AhR and harvested for the subsequent experiments. Both MSCs and AhR-activated MSCs were stimulated by TNF-α and IFN-γ (PeproTech, Rocky Hill, NJ) at a concentration of 2 μg/mL to induce immunosuppression in the co-culture experiments.
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