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5 protocols using las1000 plus chemiluminescence imaging system

1

Whole-cell Lysate Preparation and Western Blotting

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Whole-cell lysates were prepared using lysis buffer (1% NP-40, 50 mM Tris-HCl pH 8.0, 100 mM sodium fluoride, 30 mM sodium pyrophosphate, 2 mM sodium molybdate, 5 mM EDTA, and 2 mM sodium orthovanadate) containing protease inhibitors (10 μg ml−1 aprotinin, 10 μg ml−1 leupeptin, and 1 mM phenylmethylsulfonyl fluoride). Frozen tumour samples were diced into small pieces in cold lysis buffer on dry ice and homogenised using a Tissue Tearor (Model 398, Biospec Products, Inc., Bartlesville, OK, USA) for 2 s, —three to five times, on ice, and the cell lysate was then rocked overnight at 4 °C. The lysates were cleared by centrifugation at 14 000 g for 20 min at 4 °C, and lysate protein concentrations were determined using a Bio-Rad protein assay (Bio-Rad Laboratories Hercules, CA, USA). Nuclear, membrane, and cytoplasmic fraction lysates were prepared by using a Qproteome Cell Compartment Kit (Qiagen Inc., Valencia, CA, USA) according to the manufacturer's protocol. Electrophoresis and western blotting were performed as described previously (Rubin et al, 2001 (link)). The hybridisation signals were detected by chemiluminescence (ECL, Amersham Pharmacia Biotechnology, Marlborough, MA, USA) and captured using a FUJI LAS1000-plus chemiluminescence imaging system.
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2

Quantitative Analysis of Metabolic Regulators

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Tissues and cells were lysed in RIPA buffer containing 1 mmol/L PMSF protease inhibitor (P7626, Sigma). The protein concentrations were then measured using a BCA Protein Assay kit (Thermo Fisher Scientific, 23227). Primary antibodies against UCP1 (#ab10983, Abcam, 1:2000), AC9 (ab191423, Abcam, 1:1000), phospho-AMPKα (Thr172, #2535, CST, 1:1000), total-AMPKα (#5831, CST, 1:1000), phospho-HSL (Ser563, #4139, CST, 1:1000), HSL (#4107, CST, 1:1000), CPT1α (#12252, CST, 1:1000), MEK5 (#40737, CST, 1:1000), PPARγ (#2443, CST, 1:1000), and FASN (#3189, CST, 1:1000) were used according to the manufacturer’s instructions. Primary antibodies were incubated in a blocking buffer at 4 °C overnight. Secondary Alexa antibodies from Life Technologies were then added for 1 h. Detection was performed by chemiluminescence (ImmobilonTM Western, Millipore Corporation, Billerica, MA, USA), captured using a FUJI LAS 1000-plus chemiluminescence imaging system. The protein density was quantified and analyzed using Image J 1.52a software.
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3

Western Blot Detection of Bacterial Proteins

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Cell extracts were separated on an 4/8 % SDS-PAGE gel and electro-transferred onto a PVDF membrane (Millipore Corp.) at 120 mA for 4 h. Membranes were blocked using 5 % BSA and 5 % non-fat dry milk in TBST [20 mM Tris–HCl (pH 7.5), 150 mM NaCl and 0.05 % Tween-20] overnight. Anti-BcsZ peptide antibody was used at 1:3000 dilution. Detection of CsgD was carried out using polyclonal anti-CsgD peptide antibody (1:5000) as the primary antibody [30 (link)]. Anti-OmpR and anti-DsbA antibodies were used as previously described. Goat anti-rabbit immunoglobulin G (Jackson ImmunoResearch Laboratories) conjugated with horseradish peroxidase at a 1:5000 or 1:2000 dilution, respectively, was the secondary antibody. FLAG primary antibody (Sigma) was used at 1:2000 dilution with peroxidase-conjugated AffiniPure Goat Anti-Mouse IgG (Jackson ImmunoResearch) secondary antibody at 1:3000 dilution. After washing, binding of antibody was detected using the ECL light detection reagent (Roche). Visualization of bands was performed using FUJI LAS1000-plus chemiluminescence imaging system (Fuji, Stamford, CT, USA).
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4

Dystrophin Isoform Detection in Frozen Tissues

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Frozen tumor samples were diced in ice-cold lysis buffer (1% NP-40, 50 mM Tris-HCl pH 8.0, 100 mM sodium fluoride, 30 mM sodium pyrophosphate, 2 mM sodium molybdate, 5 mM EDTA, 2 mM sodium orthovanadate) on dry ice and homogenized with a Tissue Tearor Homogenizer for 3 seconds, 3–5 times, on ice, and the cell lysate was then rocked overnight at 4°C. Lysates were cleared by centrifugation at 14,000 rpm for 30 min at 4°C, and lysate protein concentrations were determined using a Bio-Rad protein assay (Bio-Rad Laboratories Hercules, CA, USA). Electrophoresis and western blotting were performed using standard techniques. The hybridization signals were detected by chemiluminescence (Immobilon Western, Millipore Corporation, MA) and captured using a FUJI LAS1000-plus chemiluminescence imaging system (Fuji Film, Tokyo, Japan). Primary antibodies were DYS1 (Novocastra, NCL-DYS1, raised against the dystrophin rod domain, amino acids 1181 and 1388, detects 427 kDa dystrophin isoform), DYS2 (Novocastra, NCL-DYS2, raised against the C-terminal 17 amino acids of dystrophin, detects 240 kDa mini-dystrophin), 7A10 (Santa Cruz, sc-47760, raised against amino acids 3200–3684 of dystrophin, detects Dp71), and GAPDH (Sigma, G8795).
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5

Dystrophin Isoform Detection in Frozen Tissues

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Frozen tumor samples were diced in ice-cold lysis buffer (1% NP-40, 50 mM Tris-HCl pH 8.0, 100 mM sodium fluoride, 30 mM sodium pyrophosphate, 2 mM sodium molybdate, 5 mM EDTA, 2 mM sodium orthovanadate) on dry ice and homogenized with a Tissue Tearor Homogenizer for 3 seconds, 3–5 times, on ice, and the cell lysate was then rocked overnight at 4°C. Lysates were cleared by centrifugation at 14,000 rpm for 30 min at 4°C, and lysate protein concentrations were determined using a Bio-Rad protein assay (Bio-Rad Laboratories Hercules, CA, USA). Electrophoresis and western blotting were performed using standard techniques. The hybridization signals were detected by chemiluminescence (Immobilon Western, Millipore Corporation, MA) and captured using a FUJI LAS1000-plus chemiluminescence imaging system (Fuji Film, Tokyo, Japan). Primary antibodies were DYS1 (Novocastra, NCL-DYS1, raised against the dystrophin rod domain, amino acids 1181 and 1388, detects 427 kDa dystrophin isoform), DYS2 (Novocastra, NCL-DYS2, raised against the C-terminal 17 amino acids of dystrophin, detects 240 kDa mini-dystrophin), 7A10 (Santa Cruz, sc-47760, raised against amino acids 3200–3684 of dystrophin, detects Dp71), and GAPDH (Sigma, G8795).
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