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Ampliprep taqman hiv 1 v2.0 system

Manufactured by Roche

The AmpliPrep TaqMan HIV-1 v2.0 system is a fully automated, real-time PCR-based in vitro diagnostic test for the quantitative detection of HIV-1 RNA in human plasma. The system combines the AmpliPrep instrument for automated sample preparation and the COBAS TaqMan Analyzer for real-time PCR amplification and detection.

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2 protocols using ampliprep taqman hiv 1 v2.0 system

1

Expanding HIV-1 Viral Culture from PBMCs

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HIV-1 samples were cultured from peripheral blood monoclonal cells (PBMCs). PBMCs were isolated from HIV-1 using the Ficoll-Hypaque density gradient cell configuration. The obtained sample was stimulated by phytohemagglutinin (PHA) for a 3 day period and co-cultured with HIV-1 positive PBMCs. Then, samples were incubated at 37 °C in the presence of 5% of CO2. P24 titer measurement was carried out on the supernatant of the co-culture sample with ELISA (Perkin Elmer, NEK050b). When p24 in the sample reached the level of 20 ng ml−1, the co-culture process was stopped. The stock concentration of the sample was 108 copies per ml. The viral load test was performed by using a Roche-COBAS AmpliPrep TaqMan HIV-1 v2.0 system which was located in the microbiology laboratory at Brigham and Women’s Hospital (BWH).4 (link)
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2

HIV-Virus Isolation and Quantification

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HIV-infected peripheral blood monoclonal cells (PBMCs) were first isolated from patient blood samples using Ficoll-Hypaque density gradient cell centrifugation. PBMCs were then stimulated by phytohemagglutinin and co-cultured with irradiated PBMCs at 37 °C and 5% of CO2. The virus titer in the co-culture supernatant was tested using HIV-1 p24 antigen ELISA (PerkinElmer Life Science, Inc., NEK050b). The co-culture process was continued till the concentration of p24 became 20 ng/ml. The cell culture supernatant was collected, and the virus concentration was tested using Roche-COBAS AmpliPrep TaqMan HIV-1 v2.0 system at Brigham and Women’s Hospital (BWH). For sample testing with the cellphone system, HIV-1 RNA was isolated from each sample using the AllPrep DNA/RNA Mini Kit (Qiagen, CA, USA) following the manufacturer's protocol.
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