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3 protocols using anti atp5a

1

Quantifying Mitochondrial Protein Levels

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Immunoblotting was performed to quantify the expression levels of various proteins in brain mitochondrial lysates [20 (link)]. Samples were prepared by lysing mitochondrial fractions with RIPA buffer as previously described [19 (link)]. Proteins were separated in 12% Bis-Tris Gel (NuPAGE, Life Technologies) and then transferred to PVDF membrane (ImmunBlot Membrane, BioRad). Membranes were blocked with 5% non-fat dry milk (Labscientific Inc.) for 1 h at room temperature and probed with appropriate primary antibodies overnight at 4°C; followed by the incubation with the appropriate secondary antibody for 1 h at room temperature. Proteins were detected using ECL (Clarity Substrate, BioRAD) and imaged using a Chemidoc system (BioRAD). The following antibodies were used in the experiments: anti-Cyclophilin D (Calbiochem, 1:5,000), anti-Tom 40 (Santa Cruz, 1:500), and for all the major F1FO ATP synthase subunits: anti-OSCP (Santa Cruz Biotechnologies, 1:5,000), anti-ATP5A (Santa Cruz Biotechnologies, 1:5,000), anti-ATP5B (Santa Cruz Biotechnologies, 1:5,000), anti-ATP6 (Protein-Tech, 1:5000), anti-ATP5F1 (Santa Cruz Biotechnologies, 1:500), anti-ATP5C1 (Santa Cruz Biotechnologies, 1:500), and anti-ATP synthase C (Abcam, 1:5000). The intensities of the immunoreactive bands were analyzed using NIH ImageJ software.
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2

Western Blot Analysis of Protein Markers

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Western blot analysis was performed as reported previously [30 (link)]. Briefly, total cell lysates were prepared in RIPA buffer (10 mM Tris–HCl, pH 7.4, 150 mM NaCl, 1% (v/v) Nonidet P-40, 1 mM EDTA, and 0.1% (w/v) SDS). Protein samples were separated on 10% SDS-polyacrylamide (SDS-PAGE) gels, and transferred onto Nitrocellulose membranes (Invitrogen iBlot Stack, Carlsbad, CA, USA). The membranes were incubated with a specific primary antibody in Tris-buffered saline (TBS) containing 0.05% Tween 20 (TBS-T) and 5% nonfat dry milk at 4 °C for overnight. After three washes with TBS-T, the blots were incubated with horseradish peroxidase-conjugated secondary antibodies (GE Healthcare, Chicago, IL, USA) for 1 h at room temperature, immunoblots were visualized using Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare, Chicago, IL, USA). The following antibodies were purchased from Millipore (Burlington, MA, USA): anti-AUF1, Anti-HuR, anti-beta-Actin, anti-GAPDH, and anti-ATP5A were purchased from Santa Cruz Biotechnology (Dallas, TA, USA).
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3

Antibodies for Mitochondrial Protein Analysis

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The antibodies that were used in the present study included: anti-adenylate kinase 2 (Ak2; catalog number: PA5-49482; Invitrogen, Waltham, MA, USA), anti-porin (catalog number: 185-197; Sigma-Aldrich, St. Louis, MO, USA), anti-cytochrome c oxidase subunit IV (COX4; catalog number: ab16056; Abcam, Cambridge, UK), anti-apoptosis-inducing factor (AIF; catalog number: MA5-15880; Invitrogen, Carlsbad, CA, USA), anti-ATP5A (catalog number: sc-136178; Santa Cruz Biotechnology, Dallas, TX, USA), and anti-beta-actin (catalog number: ab6276; Abcam) antibodies. The anti-ES1 antibody was generated in our laboratory, as previously reported [29] (link). Keyhole limpet hemocyanin conjugated to the C-terminal 17 amino acid peptide of mouse ES1 (Cys-HDGIGAMVKNVLELTGK) was used as the antigen for antibody production.
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