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Ligandtracer instrument

Manufactured by Ridgeview Instruments
Sourced in Sweden

LigandTracer instruments are analytical tools designed for real-time monitoring of biomolecular interactions. They provide a platform for studying the binding kinetics and affinities between a target molecule and its ligands.

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4 protocols using ligandtracer instrument

1

Quantitative Analysis of Radiolabeled Conjugate Binding

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Real-time in vitro binding and retention measurements of the radiolabeled conjugates were performed at room temperature using LigandTracer instruments (Ridgeview Instruments AB, Uppsala, Sweden) on CD44v6-positive A431, H314 and UM-SCC74B cells. In vitro binding specificity measurements were performed on LigandTracer instruments using MDA-MB-231 cells as negative controls. LigandTracer Grey was used for 125I-AbD19384 and LigandTracer White was used for 124I-AbD19384. Binding traces using several subsequent concentrations (0–90 nM) were obtained for at least 1 h per concentration, followed by a dissociation measurement for at least 15 h. The shapes of the real-time binding curves produced in LigandTracer were compared in the evaluation software TraceDrawer 1.6.1 (Ridgeview Instruments AB, Vänge, Sweden). Through kinetic fitting using a 1:1 and 1:2 models, the dissociation equilibrium constant KD (corresponding to the apparent affinity), the association rate constant ka and the dissociation rate kd were obtained.
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2

Real-time Binding and Retention Assay

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Real-time in vitro binding and retention measurements of the radiolabeled conjugates were performed at room temperature using LigandTracer instruments (Ridgeview Instruments AB, Uppsala, Sweden) on A431 (high CD44v6-expression) cells and UM-SCC-74B (low CD44v6-expression) cells, approximately 5x106 cells at the time of experiment. LigandTracer Grey was used for 125I-labeled conjugates and LigandTracer Yellow was used for 124I- and 111In-labeled conjugates. Generally, binding traces using several subsequent concentrations (0 – 9 nM) were obtained for at least 1 h per concentration, followed by a dissociation measurement for at least 10 h. The shapes of the real-time binding curves produced in LigandTracer were compared in the evaluation software TraceDrawer 1.6.1 (Ridgeview Instruments AB, Vänge, Sweden).
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3

Quantifying EVD-Renal Carcinoma Binding

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Binding affinities of the radiolabeled EVD to living SK-RC-52 renal carcinoma cells were measured using the LigandTracer instrument (Ridgeview Instruments). The TraceDrawer Software (Ridgeview Instruments AB) was used for evaluating the kinetics (31 (link)). The binding and dissociation kinetics were measured at room temperature. After a background measurement, increasing concentrations of radiolabeled EVD (1.8 and 5.4 nM) were added to the cells to determine the binding kinetics. After the association phase, the cell media was replaced and the retention in the dissociation phase was measured. The real time association and dissociation data were fitted into a one-to-one Langmuir binding model using the TraceDrawer Software. Both association and dissociation rates were determined, and the equilibrium dissociation constant was calculated.
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4

Kinetics of [125I]I-PIB-Ec1 Binding

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The kinetics of [125I]I-PIB-Ec1 binding to living SKOV-3 and OVCAR-3 cells was measured using LigandTracer instrument (Ridgeview Instruments, Vänge, Sweden) [39 (link)]. After the background measurement, two concentrations of [125I]I-PIB-Ec1 (3 and 9 nM) were added to cells to measure the association phase. After that, cell culture media was exchanged to measure the retention in the dissociation phase. Measurements were performed at room temperature. Dissociation constants were calculated using the TraceDrawer Software (Ridgeview Instruments, Vänge, Sweden) based on association and dissociation rates.
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