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4 protocols using apc conjugated anti pd 1

1

Measuring CAR Expression on T Cells

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To measure CAR expression, cells were first suspended in 100 μL of cold buffer (PBS containing 0.5% BSA and 2 mM EDTA) supplemented with 2 μg of goat IgG (Jackson Immunoresearch, West Grove, PA, USA) and incubated on ice. CD19-FLAG CAR-T cells were stained with 2 μL of PE- or Alexa Fluor 488-conjugated anti-FLAG (Biolegend), whereas BCMA CAR-T cells were first stained with 0.4 μg of BCMA-huFc protein (Acro Biosystems, Newark, DE, USA) and then stained with 1 μL of PE- or Alexa Fluor 488-conjugated goat anti-human IgG (Jackson Immunoresearch). Cells were co-stained with either FITC-conjugated anti-CD4 and APC-conjugated anti-CD8; PE-conjugated anti-CD27 and APC-conjugated CD45RO; or APC-conjugated anti-PD-1 (all from Biolegend). Dead cells were identified with 7-aminoactinomycin D (7-AAD, BioLegend). The cells were rinsed with 3 mL of buffer, then suspended in buffer and acquired on a FACSCalibur (BD Biosciences, San Jose, CA, USA). Gating strategies are shown in Supplemental Figure S1.
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2

Comprehensive Immune Cell Profiling

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For analysis of surface markers, single-cell suspensions were stained with following fluorochrome-conjugated antibodies following established guidelines (61 (link)): FITC-conjugated anti-CD45.1 (Biolegend, 110705), PerCP-Cyanine5.5-conjugated anti-CD8 (Biolegend, 110733), Pacific Blue-conjugated anti-CD8 (Biolegend, 100725), PE-conjugated anti-CD69 (Biolegend, 104508), FITC-conjugated TIM3 (Genetex, GTX54055), APC-conjugated anti-LAG3 (Biolegend, 125210), APC-conjugated anti-PD-1 (Biolegend, 135210), APC-conjugated anti-IL-2 (Biolegend, 503809), APC-conjugated anti-CD25 (Biolegend, 101909), FITC-conjugated anti-IFN-γ (Biolegend, 505805), APC-conjugated anti-TNF-α (Biolegend, 506307), PE-conjugated anti-H-2 K(b)/SIINFEKL Tetramer (Helixgen, HG08T14028), BV421-conjugated KLRG1 (Biolegend, 138413), BV605-CD127 (Biolegend, 135025), and APC-Cy7-conjugated anti-CD62L (Biolegend, 104427), For intracellular staining, cells were first fixed with IC Fixation Buffer (eBioscience 00-8222-49) and permeabilized with Permeabilization Buffer (Invitrogen, 00-8333-56). Flow cytometry was performed using Accuri C6 or Sony ID7000 system and analyzed with FlowJo software.
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Flow Cytometric Analysis of Tfh Subsets and Plasma Cells

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We isolated peripheral blood mononuclear cells (PBMCs) from the blood samples using density-gradient centrifugation on Ficoll-Paque. Single-cell suspensions were treated with fixable viability stain 510 (BD Bioscience, 564406) for half an hour, followed by staining with the following antibodies to distinguish the Tfh subsets: FITC- conjugated anti-CD45RA (BioLegend, N418), PE-conjugated anti-CCR6 (BioLegend, G034E3), PerCP/Cy5.5-conjugated anti-CXCR5 (BioLegend, J252D4), PE/Cy7-conjugated anti-CXCR3 (BioLegend, G025H7), APC-conjugated anti-PD-1 (BioLegend, EH12.2H7), and APC/Cy7- conjugated anti-CD4 (BioLegend, RPA-T4). For the detection of circulating plasma cells, PBMCs were stained with FITC-conjugated CD27 (BioLegend, M-T271), PE-conjugated IgD (BioLegend, W18340F), PerCP/Cy5.5-conjugated anti-CD19 (BioLegend, HIB19), and APC-conjugated CD38 (BioLegend, HB-7), followed by the treatment with fixable viability stain 510. Cell acquisition was performed using a CantoII cytometer (BD Bioscience). Data were analyzed with Diva (BD) software.
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Multicolor Flow Cytometry Analysis

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Cell suspensions from spleens were prepared by grinding tissue through sterile wire mesh and stained with a panel of uorescent-conjugated antibodies including PerCP/Cy5.5 conjugated anti-B220 (Biolegend, 103236), FITC-conjugated anti-FAS (BD Pharmingen, 554257), eFluor 660-conjugated anti-GL7 (Invitrogen, 50-5902-82), PerCP/Cy5.5 conjugated anti-CD4 (Biolegend, 100434 ), PE-conjugated anti-CXCR5 (Biolegend, 145504), and APC-conjugated anti-PD1 (Biolegend, 109112). Samples were run on a FACS Calibur (BD), and the data were analyzed with FlowJo software (TreeStar, Portland, OR).
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