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Pbr322 vector

Manufactured by New England Biolabs
Sourced in United States

The PBR322 vector is a commonly used plasmid for cloning and propagation of DNA fragments in E. coli. It contains an ampicillin resistance gene for selection and a pUC origin of replication, allowing for high copy number in the host cell.

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3 protocols using pbr322 vector

1

Characterization of MCR-1 and ICRMc Enzymes

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Full-length icrMc and its catalytic domain (icrMccat; residues 235–578) plus full-length E. coli mcr-1 and its catalytic domain (mcr-1cat; residues 208–541) were ligated into the pGDP1 and pGDP2 vectors (in house derivatives of the pBR322 vector; New England BioLabs). These plasmids utilize constitutive promoters of differing strength; the stronger β-lactamase Pbla promoter (pGDP1) and the weaker Plac promoter (pGDP2). Amino acid substitutions in icrMc were performed using Phusion High-Fidelity DNA Polymerase (Thermo Scientific) and the pGDP1:icrMc construct. Constructs were confirmed by sequencing (Central MOBIX facility, McMaster University). Susceptibility testing (in triplicate, with two biological replicates) was performed with E. coli BW25113 cultured in Mueller-Hinton II broth (cation adjusted) (Becton, Dickinson and Co, Franklin Lakes NJ) using the broth microdilution method according to CLSI guidelines. Inoculum was prepared using the colony resuspension method, and plates were incubated with aeration at 37 °C for 18 h.
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2

Absolute Telomere Length Measurement

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Absolute telomere length was determined according to published protocol (O'Callaghan & Fenech, 2011). DNA from spleen and liver was isolated using DNeasy Blood and Tissue kit (Qiagen) with slight modification of adding 1 mm DTT to eluate. Briefly, a standard curve of known quantities of a synthesized 84 mer oligonucleotide containing only TTAGGG repeats was generated based on CT (cycle threshold) using iQ SYBR Green Supermix (Bio‐Rad). A standard curve using the single copy gene, 36B4, was generated to serve as a control for amplification and to determine genome copies per sample. For both standard curves using synthesized oligomers, 20 ng of plasmid DNA (pBR322 Vector, New England Biolabs) was loaded in all wells. For samples, 20 ng of DNA was loaded in triplicate. Synthesized oligomers and primer sequences for qPCR in Table S2 and all samples were processed on a 96CFX real‐time system (Bio‐Rad).
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3

GATA3 Modulation in Colorectal Cancer

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To study the effects of GATA3 on CRC cells, we first constructed recombinant plasmids of GATA3-OE and GATA3-shRNA. The GATA3-shRNA sense sequence was 5′-CACCGGACGAGAAAGAGTGCCTCAATCAAGAGTTGAGGCACTCTTTCTCGTCCTTTTTTG-3′ (the underlined part is the target sequence, and “TCAAGAG” is the stem-loop structure). The annealed double-stranded DNA was ligated into the pGpU6/GFP/Neo vector (P05464, miaolingbio, China). The overexpressed GATA3 vector was used to amplify GATA3 by PCR. The sequence of the primers was as follows: forward, 5′-GCCTCTGCTTCATGGATCCC-3′, and reverse, 5′-CTGAGATTCCAGGGGGAGGC-3′. The amplified target gene was ligated with pBR322 vector (N3033L, NEB, USA) in the presence of restriction enzymes Hpa I/EcoRI/Xho I (TAKARA, China) and T4 DNA ligase (20325, TRANS, China). After the plasmid sequencing and identification was completed, plasmids were extracted from the fresh bacterial solution amplified from the cloned colonies using the plasmid large extraction kit (CW2104, Kangwei, China).
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