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Flexigen kit

Manufactured by Qiagen
Sourced in United States, France

The Flexigen kit is a laboratory equipment product designed for DNA extraction and purification. It provides a flexible and efficient solution for isolating high-quality DNA from a variety of sample types.

Automatically generated - may contain errors

2 protocols using flexigen kit

1

Genomic and Transcriptomic Profiling from Blood

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Genomic DNA was extracted from whole blood with Flexigen kit (QiagenInc, Valencia, California, USA) at the Basque Biobank for Research-OEHUN. DNA concentration was measured using a NanoDrop Spectrophotometer (NanoDrop Technologies, Inc, Wilmington, DE).
For RNA extraction, fresh peripheral blood mononuclear cells (PBMC) were isolated from heparinized venous blood by centrifugation on a Ficoll-Paque PLUS (GE Healthcare Bio-Sciences, Piscataway, NJ, USA). Total RNA from PBMCs was isolated with TRIzol Reagent (Invitrogen, Carlsbad, CA, USA) followed by RNeasy Mini Kit (Qiagen, Santa Clara, CA, USA). Purified total RNA was retrotranscribed to cDNA using High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA), according to manufacturer’s instructions.
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2

Genotyping of CRC-associated SNPs

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For controls and most of the patients, DNA was extracted from peripheral blood using the Flexigen Kit (Qiagen, Courtaboeuf, France) and quality of DNA was assessed using the NanoVue spectrophotometer (GE Healthcare Life Sciences, Velizy-Villacoublay, France). Genotyping of the variants rs16892766: A>C (chr8. GRCh38: g.116618444A>C), rs6983267: G>T (chr8. GRCh38: g.127401060G>T), rs10795668: G>A (chr10. GRCh38: g.8659256G>A), rs3802842: C>A (chr11. GRCh38: g.111300984C>A), rs4779584: T>C (chr15. GRCh38: g.32702555T>C), rs4939827: T>C (chr18. GRCh38: g.48927093T>C) and rs58920878: C>G (chr18. GRCh38: g.48923195C>G) was performed using the SNaPshot methodology following the manufacturer's protocol (Applied Biosystems, Meylan, France). This genotyping method was validated by Sanger sequencing of the 7 SNPs in 10 samples. Quality of the genotyping was checked by analysing 10% of the samples in duplicate, by two different technicians. The concordance was 100%.
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