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Roswell park memorial institute (rpmi)

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RPMI is a type of cell culture medium that is widely used in biological research and cell-based assays. It provides a balanced salt solution and essential nutrients to support the growth and maintenance of a variety of cell types, including human and animal cells, in vitro.

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2 411 protocols using roswell park memorial institute (rpmi)

1

ER Stress Signaling Pathway Analysis

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Tissue culture reagents: l-glutamine, DMEM, PBS, HBSS, RPMI, penicillin/streptomycin (P/S), fetal bovine serum (FBS) and RPMI were obtained from Thermo Scientific HyClone. Trypsin-EDTA and HEPES were obtained from GIBCO. Ultrapure LPS, fatty acid-free BSA, palmitate, cis-palmitoleate, NaCl, EDTA, NaF, Triton, sodium orthovanadate (Na3VO4), phenylmethanesulfonylfluoride (PMSF), and phosphatase inhibitor cocktail-3 were obtained from Sigma Aldrich. Trans palmitoleate was obtained from NuCheck Prep. Primary antibodies used: P-PERK Thr980 (3179), PERK (3192), p-AMPK (2535), total AMPK (2532) from Cell Signaling Technologies; p-eIF2α (144-28G) from Invitrogen; p-IRE1 and IL-1β (ab9722) from Abcam; β-Actin (sc-47778), Caspase-1(sc-514) from Santa Cruz Biotechnology. ECL Prime Western Blot Detection Kit was purchased Amersham Pharmacia and Trisure reagent was purchased from Bioline. The pCMV-Myc-GFP-KDEL plasmid and pcDNA5- IRE1-3F6HGFP-FRT plasmid were obtained from Peter Walter (UCSF) [51] (link).
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2

Maintenance of Cell Lines with Varied Media

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The M210B4 cell line was maintained in RPMI (Gibco) 10% FBS (HyClone), the Sl/Sl cell line was maintained in DMEM (Gibco) 15% FBS (HyClone), and the MS5 cell line was maintained in AlphaMEM (Invitrogen) 10% FBS (HyClone). The THP1 cell line was maintained in RPMI (Gibco) + 10% FBS + 1% penicillin-streptomycin (Sigma-Aldrich), the GDM-1 cell lines were maintained in RPMI (Gibco) + 20% FBS + 1% penicillin-streptomycin (Sigma-Aldrich), and the TF1 cell lines were maintained in RPMI (Gibco) + 20% FBS + 5 ng/ml GM-CSF (Sigma-Aldrich) + 1% penicillin-streptomycin.
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3

Spleen Cell Cytokine Production Assay

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Handling of spleens obtained by necropsy was performed in sterile conditions. After homogenization, red blood cell lyses were performed by addition of lyses buffer (Sigma Aldrich, St. Louis, MO, USA) and after spleen cells were suspended in Roswell Park Memorial Institute 1640 Medium (RPMI) (Thermo Fisher Scientific, USA) supplemented with 10% bovine fetal serum (BFS), 2% penicillin (100 μg/ml), streptomycin (100 U/ml), and 0.4 mM β-mercaptoethanol. Viable spleen cells were counted by Trypan Blue method in Neubauer chamber and 1 × 106 spleen cells were cultured in 96-well plates (Nunc, Thermo Fisher Scientific, USA), in RPMI alone, or with the stimuli. The stimulation was performed with 10 μg/ml of Cz, dCz, C-T, and dC-T and with RPMI (Thermo Fisher Scientific, USA). A Con-A solution (2 μg/ml) was used as unspecific stimulus to verify the viability of the spleen cells. They were cultured at 37°C and 5% CO2 for 72 h. Cytokines were measured by flow cytometry, using the Cytometric Bead Array (CBA) Mouse Th1/Th2/Th17 Cytokine Kit (BD Biosciences, USA). Flow cytometry determinations were performed in accordance with the manufacturer instructions. In addition, it is worth mentioning that the values obtained, using RPMI as stimulus, were discounted in all cases.
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4

Generation and Characterization of Recombinant Cell Lines

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Blood samples were obtained from healthy subjects on a protocol approved by the Institutional Review Board of Baylor College of Medicine. The cell lines U373, U87, T98G, A431, 293T and Raji were purchased from the American Type Culture Collection (ATCC; Manassas, VA). SNT16 cells were kindly provided by Dr. Norio Shimizu (Tokyo Medical and Dental University, Tokyo, Japan). The generation of U373 cells expressing an enhanced green fluorescent protein firefly luciferase fusion gene (U373.eGFP.ffLuc) was previously reported [7 (link)]. To generate Raji cells expressing IL13Rα1 or IL13Rα2 we cloned cDNAs encoding IL13Rα1 or IL13Rα2 (Origene, Rockville, MD) into pCDH-CMVMCS-EF1-GFP+puro (System Bioscience, Mountainview, CA). Cloning was verified by sequencing (Seqwright, Houston, TX). Raji cells were transduced with VSVG-pseudotyped lentiviral vectors to generate Raji-GFP, Raji-IL13Rα1, and Raji-IL13Rα2. Cell lines were grown in RPMI or DMEM (Thermo Scientific HyClone, Waltham, MA; Lonza, Basel, Switzerland) with 10% fetal calf serum (FCS; HyClone, Logan, UT) and 2 mM GlutaMAX-I (Invitrogen, Carlsbad, CA).
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5

Stepwise Differentiation of hESCs

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For EB differentiation assay, hESCs were dissociated by scraping and blowing and then transferred to the ultralow attachment six-well plate. For definitive endoderm differentiation assay, hESCs were seeded onto six-well plates and cultured in differentiation media for 3 days and fixed for immunocytochemical analysis or harvested for RT-qPCR. The differentiation media are as follows: day 1: RPMI (Gibco), 1× penicillin-streptomycin, activin A (100 ng ml−1; PeproTech), and 3 μM CHIR99021; day 2: RPMI, 1× penicillin-streptomycin, 0.2% FBS, and activin A (100 ng ml−1); day 3: RPMI, 1× penicillin-streptomycin, 2% FBS, and activin A (100 ng ml−1).
For pancreatic differentiation, hESCs were differentiated by a previously described protocol (28 (link)). The pancreatic differentiation media are as follows: days 1 to 3: The media are the same as the definitive endoderm differentiation media. Days 4 to 6: RPMI, 0.5× B27, 0.5× N2, 0.05% bovine serum albumin (BSA), 1× penicillin-streptomycin, and keratinocyte growth factor (KGF) (50 ng ml−1). Days 7 to 8: DMEM, 1× B27, 0.05% BSA, 1× penicillin-streptomycin, 0.25 mM vitamin C, KGF (50 ng ml−1), 0.1 μM LDN-193189, 0.1 μM GDC-0449, and 2 μM retinoic acid. Days 9 to 14: DMEM, 1× B27, 0.05% BSA, 1× penicillin-streptomycin, 0.25 mM vitamin C, 0.1 μM LDN-193189, and epidermal growth factor (50 ng ml−1).
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6

Cardiomyocyte Differentiation Protocol

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Cardiomyocyte differentiation was induced using monolayer myocardial differentiation protocols as previously described (28 (link)), with minor modifications. Cells were treated with 12 μM CHIR99021 (SELLECK) for 1 day in RPMI (GIBCO) and B27 supplement minus insulin (GIBCO) (RPMI + B27-Insulin) until cells were expanded to 90% cell confluence and then replaced by RPMI+B27-Insulin. After 2 days, cells were treated with 5 μM IWP2 (TOCRIS). IWP2 was removed on day 6. From day 8, cells were cultured in RPMI + B27. Spontaneously contracting cells could be observed from day 10 to 14. Cells were replated for purification on day 15.
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7

Coculture System for Influenza Infection

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A coculture system of NCI-H441 cells and HPMECs was developed essentially as described previously (16 (link)). Briefly, Costar HTS Transwell 24-well plates (0.4-μm pore size; Sigma, Kawasaki, Japan) were coated with 0.1 mg/ml of isolated rat tail collagen I (Sigma) in 0.1 M acetic acid (Sigma) overnight at room temperature. Both sides of the membrane were coated. HPMECs were seeded in RPMI (Gibco) with 10% FBS and 1% penicillin-streptomycin (Gibco) at a density of 10 × 105 cells/ml and incubated for 2 h to allow adherence to the membrane. Then, NCI-H441 cells were seeded at a density of 2.5 × 105 cells/ml on the upper side of the membrane in RPMI (Gibco) with 5% FBS and 1% penicillin-streptomycin. Once the cells reached confluence (∼3 to 4 days), the medium was refreshed every 12 h. The upper compartment was refreshed with RPMI containing 5% FBS, 1% penicillin-streptomycin, 1 μM dexamethasone (Sigma), and 7 mM glucose (Gibco), while the lower compartment was refreshed with RPMI (5% FBS, 1% penicillin-streptomycin) and different concentrations of glucose (either 20 mM glucose every 12 h or alternating between 7 mM and 33 mM glucose every 12 h). Importantly, primary endothelial cells still retained their endothelial phenotype after culture in RPMI (data not shown). Once the TER across the membrane reached >1,000 Ω, the cells were infected with IAV.
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8

Culturing primary ccRCC cells from VHL patients

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Primary cultures of Vhl−/− ccRCC cells were obtained from surplus tumor specimens from surgeries of VHL patients. Written informed consent was obtained from all patients for the study of their samples. All procedures had been previously approved by the Ethics Committee in accordance with general accepted guidelines for human samples (075/2017).
Briefly, the collected fresh tissue from the excess of a resected RCC was placed in sterilized tubes containing ice-cold RPMI (GIBCO, Grand Island, NY, USA). Several PBS washing steps were done before specimens were chopped into ~1 mm3 pieces. The resulting tissue pieces were subjected to enzymatic digestion with [1 mg/mL] collagenase I and dispase II (GIBCO) in RPMI at 37 °C. After 45 min incubation, a gentle pipetting was performed for a complete disaggregation as well as a trypsin (GIBCO) digestion at 37 °C for 30 min. Then, minced samples were centrifuged and cell pellets were suspended in RPMI with 20% FBS, 2 mM L-glutamine, and 100 U/mL penicillin/streptomycin (all from GIBCO) and incubated at 37 °C in humidity conditions. Sub-cultivation procedures followed a regular complete medium replacement (every 72 h or until the cultures were confluent).
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9

Isolation of PBMC and UCBMC from Healthy Donors

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UCBs were obtained from healthy donors from the CHU Montpellier. Prof. John de Vos is the responsible of the “Collection du Centre de Resources Biologiques du CHU de Montpellier” - http://www.chu-montpellier.fr/fr/plateformes (Identifiant BIOBANQUES - BB-0033-00031). PBMC and UCB mononuclear cells (UCBMC) were respectively collected from peripheral blood samples and UCB units using Histopaque -1077 (Sigma). Briefly, 13 mL Histopaque was added to 50 mL centrifugation tubes and 30 mL of 1/2 diluted blood in RPMI, (Invitrogen) was slowly added at the top. Tubes were centrifuged at 400 rcf for 30 min at 20 °C without brake. Mononuclear cells were collected from the interlayer white ring, washed in RPMI and suspended in RPMI medium supplemented with 10% FBS (Invitrogen).
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10

Inducing Spz Motility: Formulation Screening

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To investigate which components are needed to induce motility of spz, the mosquitoes were dissected and the obtained salivary glands were crushed in eleven different formulations: (1) Phosphate buffered saline which contains potassium, sodium, chloride and phosphate (PBS; Life Technologies Inc.), (2) Hanks’ balanced salt solution which contains besides the salts present in PBS also glucose, calcium, magnesium, sulphate and bicarbonate (HBSS; Life Technologies Inc.), (3) Roswell Park Memorial Institute medium (RPMI; Life Technologies Inc.) which contains besides the components of HBSS also amino acids and vitamins, (4) PBS enriched with 3.5 mg/ml bovine serum albumin (BSA; Sigma-Aldrich), (5) HBSS + 3.5 mg/ml BSA, (6) RPMI + 3.5 mg/ml BSA, (7) PBS enriched with 10% fetal bovine serum (FBS; Life Technologies Inc.), (8) HBSS + 10% FBS, (9) RPMI + 10% FBS, (10) RPMI without amino acids (Caisson Labs) + 3.5 mg/ml BSA and (11) RPMI without glucose (Life Technologies Inc.) + 3 mg/ml BSA. All eleven formulations had a physiological pH of 7.0–7.5 and a viscosity of < 1.1 cP. For imaging of the spz, 10 µl of the spz solution was pipetted on the cover slip of a confocal dish without any precoating (ø14 mm; MatTek Corporation), covered with another cover slip (ø12 mm; VWR Avantor) and imaged within 45 min. The set-up is schematically depicted in Additional file 1: Fig. S1.
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