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48 protocols using mg132

1

Modulation of Cellular Stress Responses

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Where indicated, cells were incubated with 1 μM thapsigargin (Sigma-Aldrich) in complete medium for 6 h unless otherwise noted. Cells treated with MG132 (Thermo Fisher) were incubated for 6 h in medium containing 5 μM MG132 for 6 h unless otherwise noted. In experiments employing imiquimod treatment, cells were incubated with 1 μg/ml imiquimod (Enzo Life Sciences) for 24 h in complete medium. The antibodies used were: anti-MyD88 (Cell Signaling Technology), anti-myc tag (Life Technology), anti-FLAG tag (Sigma-Aldrich), anti-GAPDH (Abcam), and anti-flavivirus E antibody 4G2 [hybridoma purchased from ATCC and maintained by the Vaccine and Gene Therapy Institute monoclonal antibody core facility (OHSU)].
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2

Preparation of α-LA, NAC, and MG-132 Solutions

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α-LA (R-α-LA) (Sigma-Aldrich Corp.) was dissolved in ethanol (0.5 M) and stored under nitrogen gas at −20 °C (stock solution). NAC (A7280) and MG-132 (C2211, both from Sigma-Aldrich Corp.) were dissolved in distilled water and dimethyl sulfoxide (DMSO; Sigma-Aldrich Corp), respectively, and stored at −20 °C. NAC and MG-132 solutions were thawed and diluted in RPMI 1640 medium (GIBCO) to 1 mM and 0.5 µM. Control cells without MG-132 were incubated with DMSO. The amount of vehicle DMSO was less than 0.1%.
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3

Modulating Amyloid-beta Levels via p62 Manipulation

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7PA2 cells were grown in Dulbecco’s Modified Eagles Media (DMEM, Life Technologies) with 10% fetal bovine serum (FBS, Life Technologies) at 37°C with humidified environment (5% CO2) in 6 well plates (5 × 105 cells/well). Cells were transfected with p62, p62-ΔUBA (a gift from Dr. Wei Ding, Capital Medical University, China), and p62-ΔLIR (a gift from Dr. Zhu, University of Kentucky). Aβ levels were measured 48 hours after transfections. The experimenter was blinded to the group allocation.
Hippocampal primary neurons were isolated from APP/PS1 P0 pups and cultured in 6 well plates coated with poly-D-lysine (Sigma-Aldrich, Saint Louis, MO). Neurons were plated in Neurobasal media (Life Technologies) supplemented with 2% B27 (Life Technologies) and 50 U/mL penicillin/streptomycin (Life Technologies). After 24h in culture, neurons were infected with 1µl/ml CamKIIa-p62-GFP AAV (virus titer 8.8×1012 GC/ml). At day 13 post infections, neurons were treated for 14 hours either with 5 mM 3MA (Sigma-Aldrich) or 10 mM MG132 (Thermo Fisher Scientific, Waltham, MA). An untreated plate was used as a control. Aβ levels were measured after this last treatments. The experimenter was blinded to the group allocation.
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4

Evaluation of Bioactive Compounds in Cell Screening

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Camptothecin (Cat# S1288), vinblastine (Cat# S1248), pimasertib (Cat# S1457), trametinib (Cat# S2673), ABT-737 (Cat# S1002), A-1155463 (Cat# S7800), and nutlin-3 (Cat# S1061) were purchased from Selleck Chemicals (Houston, TX). Bortezomib (Cat# NC0587961), etoposide (Cat# ICN19391825), MG-132 (Cat# 17-485), and Q-VD-OPh (Cat# OPH00101M) were purchased from Thermo Fisher Scientific. N-acetylcysteine (Cat# A8199), thapsigargin (Cat# T9033), tunicamycin (Cat# T7765), paclitaxel (Cat# T7191), JNK Inhibitor VIII (Cat# 420135), 2-deoxyglucose (Cat# D8375), oligomycin (Cat# O4876), and cycloheximide (Cat# C7698) were obtained from Sigma-Aldrich (St. Louis, MO). S63845 (Cat#21131) was obtained from Cayman Chemical (Ann Arbor, MI). Staurosporine (Cat# A8192) was obtained from ApexBio (Houston, TX). Erastin was the kind gift of Brent Stockwell (Columbia University). Erastin2 (compound 35MEW28 in Dixon et al., [2014 (link)]) and ML162 (CAS: 1035072-16-2) were synthesized by Acme Bioscience (Palo Alto, CA). Chemical screening was conducted as described below; the library of 261 bioactive compounds was obtained from Selleck Chemicals (Cat# L2000).
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5

Reversible Cellular Rejuvenation via Rapamycin

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The hiPSCs were cultured on Matrigel growth factor-reduced basement membrane matrix (Corning) in mTeSR medium (STEMCELL Technologies). The cells were treated with rapamycin (200 nM–2 μM, Fisher Scientific) or DMSO for indicated periods and thereafter tested for reversion in the absence of rapamycin. To analyze the proteasome function, hiPSCs were treated with 100 nM MG132 (proteasomal inhibitor, Thermo Scientific; cat. no. 508339) for 24 h. Information regarding cell lines is given in the supplemental experimental procedures.
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6

Compound Acquisition for Research

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Chemical compounds were purchased from MedChemExpress (homoharringtonine), Thermo Fisher Scientific (puromycin), and Sigma (MG132 and hygromycin).
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7

Comprehensive Compound Evaluation in Cell Lines

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Chemical reagents used in this study and their commercial sources were as follows: dydrogesterone (HY-B0257A), lumacaftor (HY-13262), abiraterone acetate (HY-75054), eltrombopag (HY-15306), ethinylestradiol (HY-B0216), and nafamostat (HY-B0190) were from MedChemExpress (Monmouth Junction, NJ, USA). Methyltestosterone (M1800000), quinestrol (E7887), nandrolone phenpropionate (BP260), and testosterone propionate (T1875) were from MERCK (Darmstadt, Germany). 25-Hydroxycholesterol (sc-214091) was from Santa Cruz Biotechnology (Dallas, TX, USA). Compounds were solubilized in DMSO and used at a concentration of 10 µM for 48 h. The proteasome inhibitor MG132 (Thermo Fisher Scientific, Waltham, MA, USA) was used at 10 µM for 24 h.
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8

Lapatinib and Trastuzumab Combination Therapy

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Lapatinib was purchased from Chemietek (Indianopolis, IN) or LC laboratories (Woburn, MA). Trastuzumab was purchased from the Mayo Clinic Pharmacy (Rochester, MN). Cycloheximide (J66901) and phosphoenolpyruvic acid monopotassium salt (B20358) were purchased from Alfa Aesar. MG132 (508338) was purchased from Thermo Fisher. Cyclocreatine was purchased from Santa Cruz (sc-217984) or Toronto Research Chemicals (C982200). Imatinib mesylate (SML1027), ammonium chloride (A9434), chloroquine (C6628–25G), 3-guanidinopropionic acid (β-GPA) (G6878), creatine (C0780), phosphocreatine (P1937), tetrabutylammonium bisulfate (86853), and β-estradiol (E2758) were purchased from Sigma. ATP disodium trihydrate (40190020–1) was purchased from bioWORLD.
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9

CRISPR-Mediated Modulation of α-Synuclein in Melanoma Cells

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SK-MEL-28 and SK-MEL-29 cells were purchased from American Type Culture Collection (ATCC, Manassas, VA) and from Sloan-Kettering Memorial Center, respectively, and propagated in DMEM supplemented with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. The human neuroblastoma cell line SH-SY5Y over expressing α-syn (SH/αS) and control SH-SY5Y cells were a kind gift of Dr. Joseph R Mazzulli (Northwestern University) and propagated in Opti-MEM supplemented with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. CRISPR/Cas9 genome editing was used to target SNCA in SK-MEL-29 cells as described previously31 (link) for SK-MEL-28 cells using α-syn CRISPR/Cas9 knockout plasmid (Santa Cruz Biotechnology # sc-417273-NIC). Lentivirus particles expressing human α-syn under cytomegalovirus (CMV) promoter (Applied Biological Materials, Inc, Canada) was used to re-express α-syn in SK-MEL-28 KO cells as described previously31 (link). For proteasome and autophagy inhibition experiments cells were treated with 10 µM MG132 (Thermofisher Scientific, # M7449) for 6 h and 50 nM bafilomycin A1 (Millipore, # B1793) for 5 h, respectively, in growth medium. The cell lines were authenticated and tested for mycoplasma contamination using MycoAlert® Mycoplasma Detection Kit (# LT07-318).
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10

eNOS Ubiquitination and β-Arrestin Regulation

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β‐arrestin1 and β‐arrestin2 siRNA (50 nM) or nontargeting siRNA (50 nM) were transfected into HUVECs for 24 h and the proteasome inhibitor MG132 (0.2 µM; Thermo Fisher Scientific) was added to the HUVECs for 48 h. The HUVECs were washed with PBS and lysed in NP‐40 lysis buffer (Boston Bioproducts) including protease and phosphatase inhibitor (Roche). The cell lysates were incubated rotated with rabbit anti‐eNOS antibody (CST; 1:50) at 4°C for overnight. Protein A/G agarose beads (Santa‐Cruz) were added to immunoprecipitated samples and rotated for 2 h with rotation at 4°C. After twice washes in lysis buffer and once in PBS at 4°C, the agarose beads were boiled in Laemmli SDS sample buffer (Alfa Aesar) for western blot analysis with rabbit anti‐eNOS antibody (CST; 1:1000), ubiquitin antibody (Santa‐Cruz; 1:200), β‐arrestin antibody (CST; 1:1000), and GAPDH antibody (CST; 1:1000).
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