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42 protocols using l citrulline

1

Evaluating L-Citrulline Effects on Confluent PAECs

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Confluent PAECs were cultured under hypoxic conditions, 4% oxygen and 5% carbon dioxide, in a humidified environment at 37°C for 48 h. To evaluate the effect of different concentrations of L-citrulline, some PAECs were treated with 0–3.0 mM L-citrulline (Sigma-Aldrich, St. Louis, MO, USA). To evaluate the effect of an arginase inhibitor, both in the presence and absence of L-citrulline, other PAECs were treated with 100 μM of S-(2-boronoethyl)-L-cysteine (BEC; Sigma-Aldrich), L-citrulline, 3 mM, or a combination of L-citrulline, 3 mM, and BEC, 100 μM.
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2

Determination of DDAH Activity in Cell Lysates

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DDAH activity (μmols/min) was determined by measuring the conversion of ADMA to L-citrulline [22 (link)]. Briefly, the cell lysate (5μL) was incubated with 1mmol/L ADMA (Sigma-Aldrich, St. Louis, MO) and 0.1mol/L phosphate buffer (pH 6.5) at 37°C for 120 minutes. This first reaction was stopped by the addition of equal volume 10% trichloroacetic acid (G-Biosciences, St. Louis, MO). The second step required addition of 0.8% diacetyl monoxime (Thermo Fisher) and 0.5% antipyrine (Thermo Fisher). This mixture was then incubated at 60°C for 110 minutes. 200μL of the supernatant was then transferred into a plate and analyzed by a spectrophotometer at 466nm. An L-citrulline standard curve was created using varying concentrations of L-citrulline (Sigma-Aldrich, St. Louis, MO) DDAH activity (V) was then calculated using the following equation:
V=(AcitA0)×100×104LB×t
Where ACit is the measured absorption A0 is the blank (determined from the L-citrulline standard), B is the slope of the L-citrulline standard curve and t is the time of the enzymatic reaction [23 (link)]. Specific DDAH activity (μmols/mg/min) was calculated after normalization to protein concentration.
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3

Quantitative LC-MS Analysis of Arginine Metabolites

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LC-MS-grade acetonitrile, water, and methanol were purchased from Merck Millipore (Warsaw, Poland). L-Arginine, SDMA, ADMA, L-citrulline, sodium tetraborate, benzoyl chloride (BCl), and HPLC-grade formic acid (FA) were obtained from Sigma-Aldrich (Poznan, Poland). Isotope-labeled asymmetric dimethylarginine (2,3,3,4,4,5,5-D7-ADMA, 98%) and L-Arginine:HCl (D7-arginine, 98%) were acquired from Cambridge Isotope Laboratories (MA, USA). Leucine-enkephalin was purchased from Waters (Warsaw, Poland).
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4

High-throughput Oncology Drug Screening

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A library of 133 FDA-approved oncology drugs was provided by the National Cancer Institute (NCI). Drugs were arrayed in polypropylene 384-well plates covering a 7-point concentration range (10 µM, 2.5 µM, 625 nM, 156 nM, 39 nM, 9.8 nM, 2.4 nM). Cells were suspended in RPMI 1640 Medium for SILAC (ThermoFisher Scientific) with 10% dialyzed FBS, 0.3 mM L-Lysine (Sigma), 1mM L-Citrulline (Sigma) with or without 1mM L-Arginine (Sigma) and plated at 1000 cells / well density. After 72 h, 50 µL of CellTiter-Glo reagent diluted 1:4 in PBS was added to each well and luminescence readings were performed using a Synergy H1 Hybrid Reader (Biotek). Each condition was assayed in duplicate (n=2) and % proliferation values were calculated by normalizing experimental wells to plate negative controls and averaging replicate values.
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5

HPLC Analysis of L-citrulline and L-arginine

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L-citrulline (purity ≥ 99%) and L-arginine (purity ≥ 98%) standard were purchased from Sigma-Aldrich (St. Louis, MO, USA). Methanol and acetonitrile of HPLC grade were purchased from Merck (Germany). Phosphoric acid (purity ≥ 85%) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Deionized water was prepared using ultrapure water purifier system (Elgastat, Bucks, UK).
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6

Vascular Reactivity Compound Protocols

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ADMA, BK and L-citrulline were purchased from Sigma-Aldrich (St. Louis, MO, USA). U46619 was from Cayman Chemical (Ann Arbor, Mi, USA). Stock solutions of U46619 and BK were kept at –20 °C until required.
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7

Biochemical Assay Reagents Protocol

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L-Arginine, L-citrulline, -nitro-L-Arginine, dithiothreitol (DTT), hemoglobin, superoxide dismutase, catalase, bovine serum albumin, L-NAME, SEITU, (6R)-5,6,7,8-tetrahydrobiopterin, NADPH, porcine brain calmodulin, and all common salts and buffers were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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8

Colorimetric Assay for Citrulline Ureidase Activity

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We determined the activity of F. tularensis using a color test with ninhydrin [26 (link)] based on ability of citrulline ureidase to degrade citrulline to ornithine, which, on reaction with ninhydrin reagent gives a pink coloration [27 (link)].
A 1.0-ml sample of bacterial suspension (1010 bacteria) in 0.1 M phosphate buffered saline (PBS, pH 6.5) was mixed with 1.0 ml of 0.7% (w/v) l-citrulline (Sigma Chemical Co., St. Louis, MO, USA) and incubated for 20 h at 30°C. An aliquot (0.01 ml) of the mixture was removed and added to 0.49 ml of distilled water, 1.0 ml of freshly prepared ninhydrin reagent (625 mg of ninhydrin [Sigma] in 10 ml of 6 M H3PO4 and 15 ml of glacial acetic acid), and 1.5 ml of acetic acid. Samples were boiled for 1 h, and pink colored samples were considered to have citrulline ureidase activity.
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9

Colorimetric Assay for Serum Citrulline

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Hundred microliter of serum were incubated for 30 min at 37°C after addition of 50 μL urease 12 mg/mL and of 3 mL of chromic mixture. The chromic mixture consisted of 25% H2SO4, 20% H3PO4, 9.24 μM FeCl3⋅6H2O, 0.125% 2,3-butanedione monoxime, and 0.0075% thiosemicarbazide mixed by vortex and incubated at 100°C for 5 min. The samples were cooled to room temperature and the color developed was measured at 530 nm. The calibration curve was made with a standard solution of L-citrulline 1 μmol/L from Sigma-Aldrich (St. Louis, MO, United States) (Pérez-Torres et al., 2016 (link)).
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10

Regulation of Autophagy via RhoA

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Pegylated human recombinant Arginase I cobalt [HuArgI (Co)-PEG5000] (Pegzilarginase) was a gift from Aeaglea BioTherapeutics (Texas, USA). The constitutively active RhoA (CA-RhoA) and the empty vector plasmid (pcDNA3.1) constructs were also gifts from Dr. Yamaguchi Hideki. Chloroquine, rapamycin and L-citrulline were purchased from Sigma-Aldrich (Darmstadt, Germany). Cyto-ID autophagy detection kit was obtained from Enzo Life Sciences (New York, USA). RhoA/Rac1/Cdc42 Activation Assay Combo Kit was from Cell BioLabs (Sand Diego, CA, USA). Actin and vinculin primary antibodies were purchased from Abcam (Cambridge, UK). Rabbit polyclonal anti-LC3 antibody was obtained from Cell Signaling (Cell Signaling Technology Inc., US). Fluorescent secondary Alexa Fluor 488-green as well as Rhodamine phalloidin stain were obtained from Invitrogen (Massachusetts, USA). Hiperfect transfection reagent, luciferase GL2 and human Flexi Tubes siRNA for RhoA were bought from Qiagen (Hilden, Germany). Lipofectamine LTX was from Waltham (Massachusetts, USA) and crystal violet was from SCP Science (Quebec, Canada).
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