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The SCRC-4000 is a specialized piece of laboratory equipment designed for the cultivation and maintenance of cell cultures. Its core function is to provide a controlled and consistent environment for the growth and propagation of various cell lines. The SCRC-4000 encompasses features such as temperature regulation, humidity control, and gas supply management to support the specific requirements of cell culture applications.

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23 protocols using scrc 4000

1

Culturing ASC52telo and Capan-1 Cell Lines

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The immortalized human AD-MSC cell line ASC52telo (ATCC SCRC-4000) and the human pancreatic cancer cell line Capan−1 (ATCC HTB-79) were utilized and cultured following previously established protocols [35 (link),37 (link)]. Briefly, both cell lines were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; FUJIFILM Wako Pure Chemical Corp., Osaka, Japan) supplemented with 20% fetal bovine serum (FBS), 1% nonessential amino acids, and 1% streptomycin-penicillin at 37 °C in a humidified atmosphere with 5% CO2. Both cells were expanded and maintained within 20 passages under these culture conditions.
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2

Viability of Immortalized Adipose-Derived Stem Cells

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Adipose stem cells ASC52telo (ASCs), hTERT immortalized adipose-derived mesenchymal stem cells (ATCC® SCRC-4000, Manassas, VA, USA) cultured according to ATCC protocols, were expanded in a Mesenchymal Stem Cell Basal Medium (ATCC PCS-500-030) with a Mesenchymal Stem Cell Growth Kit (ATCC PCS-500-040). Immediately after the decontamination procedures, ASCs were seeded onto the top of the disks. Before cell seeding, a proper amount of medium was placed in each microplate well containing the samples. Then, the cell suspension, adjusted to 2.5 × 104 cells/mL, was pipetted in a meandering pattern above the prepared specimen. The cells were cultured in the ASCs’ medium without antibiotics (to allow concomitant biofilm regrowth) at 37 °C in a humidified atmosphere with 5% CO2 for 24, 48 and 72 h. Cell Titer GLO (Promega, Madison, WI, USA) was utilized to measure the ATP release, which is associated to the viability of the cells at 24, 48 and 72 h.
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3

Differentiation and Transfection of Cardiomyocytes and Vascular Smooth Muscle Cells

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Immunofluorescent staining of troponin (Abcam ab10214), and video documentation of beating cardiomyocytes validated successful CM differentiation (Video S1). Transfections of 21 days differentiated CMs were performed with 2x106 cells and 10 μg of the MPRA plasmid pool (split in two wells of a 6-well plate) and Lipofectamine Stem Transfection Reagent (STEM00015, ThermoFisher) for 48 h. Transfections with GFP served to evaluate transfection efficiencies on an EVOS M5000 epifluorescence microscope (ThermoFisher, Figure S1).
Successful VSMC differentiation of hTERT-immortalized adipose derived primary human mesenchymal stem cells (MSCs, SCRC4000, ATCC) was validated by quantification of smooth muscle markers (transgelin [TAGLN], calponin-1 [CNN1], and smooth muscle actin [ACTA2]) using qRT-PCR with PowerUp (ABI) (Figure S1, Table S24).124 (link) CTs were normalized to GAPDH as a housekeeper. 19-20 days differentiated VSMCs (1.1x106 cells / 10 cm dish) were transfected with 12 μg MPRA oligo pool and 12 μl GeneXPlus (1:1 ratio, ACS-4004, ATCC) for 48 h. Transfection efficiency was evaluated as described for CMs (Figure S1). Lower transfection efficiencies and thus lower barcode recovery rates were observed in VSMCs, consequently impacting our statistical power to detect regulatory variants in this cell type.
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4

Expansion and Culture of Bone Marrow and Adipose-Derived Stem Cells

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Bone marrow was obtained from discarded and de-identified waste tissue from adult bone marrow transplant donors in accordance with the Institutional Review Board of Duke University Medical Center. Adherent cells were expanded and maintained in expansion medium: DMEM-low glucose (Gibco), 1% penicillin/streptomycin (Gibco), 10% fetal bovine serum (FBS) (ThermoFisher), and 1 ng/mL basic fibroblast growth factor (Roche) (Hagmann et al., 2013 (link)).
Adipose-derived stem cells (ASCs) were purchased from ATCC (SCRC-4000) and cultured in complete growth medium: mesenchymal stem cells basal medium (ATCC PCS-500–030), mesenchymal stem cell growth kit (ATCC PCS-500–040) (2% FBS, 5 ng/mL basic recombinant human FGF, 5 ng/mL acidic recombinant human FGF, 5 ng/mL recombinant human EGF, 2.4 nM L-alanyl-L-glutamine), and 0.2 mg/mL G418.
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5

Differentiation of iPSCs and MSCs

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All studies were performed under the regulation of the SickKids Research Ethics Board and Canadian Institutes of Health Research Stem Cell Oversight Committee. Human iPS cells derived from peripheral blood lymphocytes of a healthy adult male donor (PGPC-17),106 (link) were differentiated into cardiomyocytes (CMs) using the STEMdiff CM Differentiation Kit (STEMCELL Technologies). hTERT-immortalized female adipose-derived primary human mesenchymal stem cells (MSCs, SCRC4000, ATCC) were maintained in basal MSC media (PCS-500-030, ATCC), supplemented with 2 % FBS (ThermoFisher), 5 ng/ml recombinant human FGF basic (R&D Systems 233-FB-010), 5 ng/ml recombinant human FGF acidic (R&D Systems 232-FA-025), 5 ng/ml recombinant human EGF (R&D Systems 236-EG-200), 2.4 mM L-Alanyl-L-Glutamine (ThermoFisher), and 0.2 mg/ml Geneticin (G418, ThermoFisher). MSCs were differentiated into VSMCs over the course of 19 days by supplementing the above described basal MSC media with 1 ng/ml TGF-β1 (R&D Systems 240-B-002) as previously described.124 (link),125 (link) HEK-293 cells (ATCC) were cultured in EMEM (Gibco), supplemented with 10 % FBS (Canadian origin, ThermoFisher) and 1 % Penicillin/Streptomycin (ThermoFisher). All cells were maintained at sub-confluent conditions, maintained at 37 C with 5 % CO2 and were passaged every 3-4 days.
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6

Adipocyte Differentiation of Immortalized ASCs

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Human telomerase reverse transcriptase immortalized adipose‐derived MSC (ASC52telo, SCRC‐4000, ATCC, LGC Standards SLU, Barcelona, Spain) cells were cultured in Mesenchymal Stem Cell Basal Medium (ATCC PCS-500-030) plus FBS (2%), rhFGF basic (5 ng/ml), rhFGF acidic (5 ng/ml), rhEGF (5 ng/ml), L-Alanyl-l-Glutamine (2.4 mM) and G418 (0.2 mg/ml) at 37°C in a 5% CO2 in air atmosphere. Adipocyte differentiation was performed as previously reported.15 (link) Briefly, ASC52telo cells were cultured in three repetitive cycles of 72 h in adipogenic differentiation medium composed of DMEM/Nutrient Mix F‐12 medium, FBS (10%), penicillin, streptomycin, human insulin (10 μg/mL), dexamethasone (1 μmol/L), isobutylmethylxanthine (0.5 mmol/L), and PPARγ agonists (rosiglitazone, 1 μmol/L), followed by 72 h in adipogenic maintenance medium composed of DMEM/Nutrient Mix F‐12 medium, FBS (10%), penicillin, streptomycin, and human insulin (10 μg/mL). For time course experiment, cells were harvested and stored at -80°C for RNA purification at day 0, 2, 5, 7, 9, 12 and 15.
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7

Preparation of Adipose-Derived Stem Cell Conditioned Medium

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The human immortalized ASC cell line ASC52telo (SCRC-4000; ATCC, Manassas, VA, USA) was used for ASC-CM extraction. SCRC-4000 cells were cultured in DMEM supplemented with 10% FBS and 1% penicillin-streptomycin until they reached confluence. The waste culture medium was removed, and the cells were washed twice in PBS. Subsequently, fresh serum-free DMEM was added to the cells. The cells were then incubated at 37 °C in a humidified atmosphere containing 5% CO2 for 48 h. After 48 h of incubation, the medium was collected and ultra-filtrated with a 0.45 µm filter. The supernatant obtained after filtering the cell components was used as the ASC-CM without further dilution. FBS was then added to achieve a concentration of 10% when used for experiments.
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8

Protein Expression Analysis of ASCs and AMCs

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ASCs and AMCs kept under experimental conditions (72 h and 21 days TNFα 300 U/mL) were scraped and incubated in ice for 30 min with RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Nonidet P40) and a protease inhibitor cocktail (Complete EDTA-free, Roche Molecular Biochemicals, Merck KGaA, Darmstadt, Germany). The total cellular lysate was centrifuged at 14,000 rpm for 1 h to clear cell debris. The protein concentration was determined using the Bradford assay. Proteins were denatured in Laemmli sample buffer (2% SDS, 10% glycerol, 5% 2-mercaptoethanol, 62.5 mM Tris-HCl pH 6.8, 0.004% bromophenol blue), separated on 12% polyacrylamide gels, transferred to nitrocellulose membranes (TransBlot Transfer Medium Bio-Rad Laboratories S.r.l., Segrate, MI, Italy), and blotted with the primary antibodies listed in Table 2. Antigen–antibody complexes were visualized using the SuperSignal West Femto Maximum Sensitivity Substrate (Pierce) on a CCD camera (Chemidoc, Bio-Rad Laboratories S.r.l., Segrate, MI, Italy).
The ASC52telo (SCRC-4000, ATCC, Manassas, VA, USA) hTERT immortalized adipose derived mesenchymal stem cell line was used as a positive control. Western blot bands were quantified by densitometry using ImageJ software V1.52 and the results were presented as histograms using GraphPad Prism 5 software (California).
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9

Characterizing Extracellular Vesicles for Virus Mimicry

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Extracellular vesicles (EVs) isolated from cell cultures were used to evaluate material properties on membrane particle absorption and mimic virus particles. EVs were isolated and characterized from ASC52-telo (SCRC-4000, ATCC, Manassas, VA, USA) cell culture similarly to previously described protocols [38 (link),39 (link)]. Single-channel devices were washed with 70% ethanol overnight, dried, and washed with sterile 1× PBS overnight. Then, 20 µL of 1.02 × 108 EVs/mL in 0.02 µm filtered 1× PBS were injected into channels and incubated for 1 h at +37 °C. After incubation, EV solutions from channels were collected and measured by nanoparticle tracking analysis (NTA) with an NS 300 instrument (Malvern, Philadelphia, PA, USA) equipped with green (532 nm) laser and scientific Complementary metal–oxide–semiconductor (sCMOS) camera and compared with input sample. Here, 0.02 µm filtered 1× PBS was used as a negative control. Measurements were performed on five 30 s videos that were recorded using camera level 12. The data were analyzed using NTA software v3.0 with the detection threshold 8 and screen gain at 5. Experiments were performed in biological duplicates and measured in technical duplicates. p-value was calculated by the Mann–Whitney test.
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10

Labeling and Tracking of 4T1 Extracellular Vesicles

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The 4T1 EVs were labelled with BODIPY 493/503 (Thermo Fisher) as per the manufacturer's protocol. Briefly, various EV samples (50–100 μl) were labelled for 1 h at 37°C (∼109 – 1010 EVs/5μl of dye).  Samples were then passed through a Sephadex G‐50 column (1 ml syringe; 0.5 ml bed volume adjusted with PBS buffer) at 2000 rpm for 2 min. The columns were washed with 25 μl of PBS at the same speed for 2 min and the collected EVs were counted for further analysis. The unincorporated dyes were trapped at the upper 1/3 of the column and EVs were collected in the flow‐through. Labelled EVs were then added to confluent cultures of ASC52telo hTERT‐immortalized MSCs (SCRC‐4000; ATCC). EVs were added at an approximate ratio of 1:2000 (recipient cell to EV ratio) and incubated at 37°C for a period of 6 days. Images were captured using a fluorescent microscope.
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