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8 protocols using total tau

1

Western Blot Analysis of Tau Phosphorylation

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Twenty micrograms of protein of each sample were run on SDS-polyacrylamide gels (TGX gels, Bio-Rad), and transferred to nitrocellulose membranes by using the Trans-Blot® Turbo Transfer System (Bio-Rad). The membranes were blocked with 5% BSA in Tris-buffered saline (TBS) plus 0.1% Tween-20 for 1 h, and then incubated with primary antibodies at 4°C overnight. The primary antibodies used were: anti-AT8 (Thermo Fisher, MN1020), anti-AT100 (Thermo Fisher, MN1060), anti-AT180 (Thermo Fisher, MN1040) and total Tau (C-terminal, Dako A0024). After washes with PBST, sections were incubated with Alexa 488- and 594-conjugated secondary antibodies (Invitrogen). The membranes were imaged using the ChemiDoc system (Bio-Rad), and quantified with FIJI software.
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2

Synaptic Protein Extraction and Western Blotting

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Synaptosome extractions were performed using Syn-PER™ synaptic protein extraction reagent (ThermoFisher, UK). Western blotting was performed using standard methods as described previously [51 (link)]. Briefly, after protein quantification, 20 μg protein/sample was resolved on either a 10 or 7.5% polyacrylamide gel and detected with the relevant antibody (NR2B, pY1472-NR2B (Millipore), GluA1, pSer845 GluA1, PSD95 (Abcam), total ERK, phospho-ERK (Cell Signalling Technologies), NR1 (BD Biosciences), Total Tau (DAKO), PHF1 (p-Tau Ser396/404; a generous gift from P. Davies) and β-actin (Sigma).
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3

Immunohistochemical Antibody Characterization

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CP13, PHF1 and MC1 antibodies were kind gifts from P. Davies (Albert Einstein College of Medicine). Other antibodies were purchased from commercial sources as follows: AT8 (Pierce) and AT100 (Innogenetics), total Tau (DAKO), Tau1 (Millipore), PTEN (Cell Signaling), LAMP1 (Millipore), LC3 (Novus Biological and Sigma), Akt (Cell Signaling) and pAkt (Cell Signaling), P70S6K (Cell Signaling) and pP70S6K (Cell Signaling), ULK1 (Cell Signaling) and pULK1 (Cell Signaling), Y188 (Epitomics), 6E10 (Covance), NeuN (Chemicon), GFAP (DAKO), Iba1 (Waco), GAPDH (Sigma), FLAG (Biolegend), human TFEB (Cell Signaling), mouse and human TFEB (Abcam and Abmart), and γ-tubulin (Sigma).
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4

Western Blot Analysis of Tau Phosphorylation in Neuronal Cultures

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Performed as described previously [10 (link)]. Prior to immunoblotting, all samples from control and treated cells were assayed for total protein concentration, and normalized accordingly. Neuronal cultures were probed with antibodies recognizing neuronal marker NeuN, total tau (Dako) and tau phosphorylated at Ser199 (SantaCruz). NeuN was used to measure PHF induced cytotoxicity [38 (link)–43 (link)] and to control for tau levels [44 (link)]. Because the expression of tau protein can vary between animals, even when on a homozygous background, each experiment was preformed using cells prepared from a single animal. Untreated control cells for each experiment were also prepared using the same animal. Thus, each experiment has its own unique set of control samples.
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5

Antibody Sourcing for Neurodegenerative Research

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ERK1/2 (#4696) was purchased from Cell Signaling. Total tau (#A0024) was purchased from DAKO. SIRT-1 (#A21993) was purchased from Life Technology. SIRT-1 (#15404) was purchased from Santa Cruz (Dallas, TX, USA). Aβ-6E10 (#SIG-39320) was purchased from Covance (Princeton, NJ, USA). As secondary antibodies, goat anti-Mouse Alexa 488 (#A110290) was purchased from Life Technology, horseradish peroxidase (HRP) conjugated goat anti-Rabbit IgG (111-035-003) and goat anti-Mouse (115-035-003) IgG were purchased from Jackson ImmunoResearch (West Grove, PA, USA).
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6

Analyzing PAR-1 protein interactions

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For coimmunoprecipitation experiments, 200 fly heads expressing UAS-PAR-1-WT-Myc transgene driven by GMR-GAL4 were homogenized in lysis buffer (50 mM Tris-HCl pH 8.0%, 1% Triton X-100, 150 mM NaCl, 2 mM Na3VO4,10 mM NaF, 10% glycerol, protease inhibitors), and the supernatant of lysate was obtained after centrifugation at 12,000 × g for 30 minutes at 4 °C. The supernatant was pre-cleared by incubation with protein A/G agarose (Pierce) for 1 hour at 4 °C. The supernatant was incubated with antiPAR-1 antibodies for 2 hours at 4 °C and then incubated with protein A/G agarose for 12 hours at 4 °C. Beads were washed 5 times with lysis buffer or PBS and boiled in SDS sample buffer. The samples were separated by gel electrophoresis and analyzed by western blot analysis. For western blot analysis, the following primary antibodies were used: anti-PAR-1 (1:8000), anti-phospho-PAR-1 (1:1000); anti-GFP (1:2,000, Abcam); anti-Myc (1:1,000, Millipore); anti-tau (pS262) (1:2,000, Life technology); total tau (1:2,000, Dako); and anti-GAPDH (1:2,000, Abclone). All primary antibodies were diluted in 0.5% BSA in TBST (tris-buffered saline, 0.1% tween 20) and incubated with the membrane at 4 °C overnight. All secondary antibodies (Jackson ImmunoResearch Laboratories) were incubated for 1 hour at room temperature.
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7

Analyzing Alzheimer's Disease Pathways

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All chemicals and reagents were purchased from Sigma–Aldrich (Poole, UK), Fisher Scientific (Leicester, UK) or Vector Laboratories Ltd (Peterborough, UK) unless specified. Antibodies used were: anti N-APP (22C11; WB 1:500, IHC 1:20) and total and phospho anti-GSK-3α/β (1:750) (Millipore, Watford, UK); anti-Aβ (6E10, BioLegend, San Diego, CA, USA); anti-clathrin heavy chain (CHC) (Clone 23; WB 1:1200, IHC 1;20), anti-caveolin-2 (Clone 65; WB 1:200, IHC 1:50), anti-flotillin-1 (Clone 18; 1:300) and anti-dynamin-2 (1:500) (BD Biosciences, Oxford, UK); anti-BACE1 (1:500, Merck Chemicals Ltd. Nottingham, UK); anti-AP180 (LP2D11; 1:750), anti-PICALM (WB 1:700, IHC 1:100), anti-flotillin-2 (1:500) and anti-AP-2 (1:500) (Novus Biologicals, Littleton, CO, USA); anti-caveolin-1 (WB 1:800, IHC 1:100, Cell Signalling Technology, Beverly, MA, USA); anti-caveolin-3 (1:200), anti-presenilin-1 (PS-1, 1:250), anti-ADAM10 (1:5000), anti-SORLA (EPR14670; 1:400), anti-dynamin-1 (1:300) and anti-BIN-1 (1:100) (Abcam, Cambridge, MA); anti-Rab5 (S-19; WB 1:300, IHC 1:30, Santa Cruz Biotechnology, Santa Cruz, CA, USA) and total tau (1:2000, Dako, Hamburg, Germany). Monoclonal anti-phospho-tau Ser396/Ser404 (PHF-1, 1:100) was a generous gift from Prof. Peter Davies, Albert Einstein College of Medicine, Bronx, NY, USA.
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8

Tau Protein Detection Techniques

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For western blot analysis and immunocytochemistry, two Tau-specific antibodies were used: total Tau (Dako, polyclonal, 1:5,000), and Tau5 (Thermo Fisher, monoclonal, 1:5,000). Both IRDye 800CW goat anti-rabbit IgG and IRDye 680RD goat anti-mouse IgG (Licor) were used as secondary antibodies for western blot analysis. For immunocytochemistry in combination with Tau5, Alexa Fluor 555-labelled goat-anti-mouse antibody (LifeTechnologies, Thermo Fisher, 1:500) was used for detection. To detect actin, phalloidin-Alexa Fluor 647 (New England Biolabs, 1:100) was used.
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