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182 protocols using avance 500 spectrometer

1

Isotope-Labeled Precursors for NMR Analysis

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Sodium [1,2-13C2]acetate and L-valine-d8 were purchased from Cambridge Isotope Laboratories, Inc. [U-13C6]Glucose, sodium [1-13C]propionate, and L-[methyl-13C]methionine were purchased from Sigma-Aldrich Co. LLC. 1H and 13C NMR spectra were obtained on a Bruker AVANCE 500 spectrometer in DMSO-d6 using the signal of the residual solvent signals (δH 2.50, δC 40.0) as an internal standard. The 2H NMR spectrum was obtained on a Bruker AVANCE 500 spectrometer in DMSO. Chemical shifts were referenced to the solvent signal (δH(D) 2.50). ESITOFMS were recorded on a Bruker microTOF focus.
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2

Analytical Techniques for Compound Characterization

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Optical rotations were measured on a PerkineElmer 341 polarimeter. 1H and 13C NMR spectra were recorded on Bruker Avance-500 spectrometers. ESI–MS were measured on an Agilent LC/MSD Trap XCT spectrometer, and HRESIMS were performed on an Agilent 6520 Accurate-MS Q-TOF LC/MS system. A preparative column (ZORBAX-ODS GSA10250AP1301, C18, 5 μm, 250 × 10 mm) was used for semi-preparative HPLC (Shimadzu LC-2010A HT). TLC analysis was run on HSGF254 silica gel plates (10–40 μm, Yantai, China). Column chromatography (CC) was performed on silica (100–200, 200–300 mesh, Yantai, China), YMC-GEL ODS-A (50 μm, YMC, Japan), Sephadex LH-20 (Amersham Pharmacia Biotech AB, Uppsala, Sweden).
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3

Comprehensive Analytical Characterization of Materials

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SEM micrographs were performed on a Zeiss VEVO 50, EDS analyses with an IXRF Systems 500. XRD patterns were collected in a RIGAKU diffractometer at 30 kV and 20 mA using CuKα radiation. DTA was carried out using a Perkin Elmer 1700 analyzer. The infrared spectra of solid samples were recorded as KBr pellets in the 4000–400 cm−1 range on a Varian 640 spectrometer operating in the FT mode. Esters contents and yields were determined with a GC/MS-QP 2010/AOC 5000 AUTO INJECTOR/Shimadzu Gas Chromatograph/Mass Spectrometer equipped with a 30 m Agilent J&W GC DB-5 MS column. Direct insertion spectra were measured at 70 eV. Quantitative analyses were performed on a Shimadzu GC-2010 gas chromatograph equipped with a flame ionization detector. 1H- and 13C-NMR spectra were recorded on Bruker Avance 400 and Avance 500 Spectrometers. All reactions were performed under atmospheric pressure and were monitored by TLC with Silica Gel 60 F 254 on aluminum; the chromatograms were visualized by UV or using the ethanolic vanillin developing agent. Silica gel (Merck 230–400 mesh) was used for purification of products by flash column chromatography using hexane and ethyl acetate (9:1) as eluent.
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4

Structural Characterization of Compounds

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Optical rotations were measured on an Anton Paar MCP200 polarimeter (Graz, Austria). 1 H and 13 C NMR data were acquired with Bruker Avance-500 spectrometers (Rheinstetten, Germany). The HSQC and HMBC experiments were optimized for 125.0 and 8.0 Hz, respectively. HR-ESI-MS and HPLC-ESI-MS data were recorded on an Accurate-Mass-Q-TOF LC/MS 6520 instrument (Santa Clara, CA, USA) in positive ion mode. HPLC data were obtained with a Waters 2695 instrument (Milford, MA, USA). Preparative HPLC was performed on an Agilent 1200 HPLC system using a C 18 column (7.8 × 300 mm, Waters, 7 μm; detector: UV) with a flow rate of 2.2 ml min -1 . The absorbance of contents in the 96-well clear plate was detected by a SpectraMax Paradigm microplate reader (Sunnyvale, CA, USA).
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5

Characterization of Inorganic Complexes

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The NMR spectra were measured on Bruker Avance 500 spectrometer. The positive-mode electrospray mass spectra of methanol solutions of the complexes were obtained using Bruker microOTOF-Q instrument. The CD spectra were measured on Jasco J-715 Spectropolarimeter. The elemental analyses were carried out on a Perkin-Elmer 2400 CHN elemental analyzer.
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6

Comprehensive Spectroscopic Characterization

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Specific optical rotation was measured on a PerkinElmer 341 instrument at 25°C. Cary 5000 spectrophotometer was used to record UV spectra in MeOH. ECD data were obtained by Model 420SF CD spectrometer (Aviv Biomedical Inc). In KBr discs, IR spectra were obtained using Fourier infrared IS50 spectrometer. All NMR experiments were performed at room temperature on a Bruker AVANCE 500 spectrometer using the signals of residual solvent protons (CDCl3: δH 7.26; CD3OD: δH 3.31) and carbons (CDCl3: δC 77.1; CD3OD: δC 49.2). HRESIMS spectra were tested by Waters TQ-XS mass spectrometer. Column chromatography (CC) was conducted by silica gel (200–300 mesh, Yantai Huiyou Silica gel company) and Sephadex LH-20 (CHCl2/MeOH, v/v 1:1) (Pharmacia Sweden). On silica gel plates, thin layer chromatography (TLC) was conducted (GF 254 Silica gel Thin Layer Plate Yantai Huiyou Silica company). The Typical Culture Preservation Committee Cell Bank, China provided RAW264.7 cells; the fetal bovine serum (FBS) was obtained by Gibco; ProCell provided Dulbecco's modified Eagle's medium (DMEM); Sigma supplied LPS and L-NMMA; Shanghai Beyotime Biotechnology supplied the NO kit. Thermo Fisher Scientific (Shanghai, China) provided the primers for iNOS. Cell Signaling (Beverly, MA, USA) supplied all the antibodies.
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7

Detailed NMR Spectroscopy Protocol

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NMR spectra were acquired by using an Avance-500 spectrometer (Bruker, Karlsruhe, Germany) equipped with a cryogenic probe that fits 5-mm-diameter NMR tubes (CPDUL). 1H-NMR spectra were collected by using the Bruker pulse program, zgpr, which uses solvent pre-saturation to remove the residual-water signal. The acquisition was done in acquisition mode with a spectral width of 20 ppm, in digital quadrature detection, with a proton 90° pulse value of 15 μs, an offset frequency of 4.7 ppm, a 4 s relaxation delay, a 20 s increment delay, 65,536 data points, and 128 scans. Two-dimensional NMR spectra were recorded on an Avance-800 spectrometer with a cryogenic probe that fits 5-mm-diameter NMR tubes (CPTCI). 1H-13C HSQC spectra were collected by using echo-anti-echo gradient selection (from the hsqcetgpsisp pulse program in the Bruker library) with 90° pulse values of 15 µs for protons and 15 µs for carbon, a 75 (f1) and 4.7 (f2) ppm offset frequency, a 2 s relaxation delay, a 160 (f1) and 12 (f2) ppm spectral width, 512 (f1) and 1,024 (f2) data points and 64 scans. When appropriate, to support metabolite annotation with the HSQC spectrum, other 2D NMR spectra (1H-1H DQF-COSY, TOCSY) were also recorded with the same instrument. The chemical shifts were calibrated by taking the signal of the DSS methyl group to be 0.00 ppm for 1H and 13C.
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8

NMR Spectroscopy of Organic Compounds

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Nuclear magnetic resonance (1H-NMR) was accomplished with the Avance 500 spectrometer (Bruker Biospin, Rheinstetten, Germany), equipped with a 500 MHz magnet and a triple resonance inverse (TXI) probe. The experiment was carried out at room temperature with deuterated chloroform as solvent and tetramethylsilane as internal standard.
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9

NMR and Mass Spectrometry Analysis of Aspiletrein A

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Aspiletrein A (AA), a dry powder, was isolated and characterized as previously described [25 (link)]. The structure was determined by NMR analysis on a Bruker Avance 500 spectrometer (Bruker, MA, USA), and the HRESIMS was recorded on an Agilent 6545 accurate-mass spectrometer (Agilent, CA, USA). AA: White amorphous powder [α]25D − 92.0 (c 0.1, MeOH); IR (KBr) νmax (cm− 1): 3422, 2928, 1632, 1454, 1379, 1344, 1221, 1165, 1049, 986, 918, 847, 810; 1H NMR (500 MHz, pyridine-d5) and 13C NMR (125 MHz, pyridine-d5), HRESIMS m/z 891.4522 [M + Cl] (calcd. For C44H72O16Cl, 891.4509) [25 (link)]. AA was dissolved in DMSO to yield a stock solution and further diluted in complete medium to the desired concentrations before use. The control samples in the experiments were incubated with 0.1% DMSO in the culture medium. The final concentration of DMSO was less than 0.1%, which showed no toxicity.
Hoechst 33342, propidium iodide, 3-(4,5-di-methylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were obtained from Sigma Chemical, Inc. (St. Louis, MO, USA). Rabbit anti-phosphorylated Akt (S473), rabbit anti-Akt and HRP-linked anti-rabbit IgG were purchased from Cell Signaling Technology (Beverly, MA, USA).
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10

NMR Analysis of Oligosaccharide Samples

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Each purified oligosaccharide sample (50 mg) with different degree of polymerization was loaded into nuclear magnetic tube and dissolved in D2O at room temperature. The 1H spectrum and 13C nuclear magnetic resonance (NMR) spectrum were recorded on a Bruker AVANCE 500 spectrometer (Bruker BioSpin Corporation, Billerica, MA, United States).
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