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6 protocols using mhc 2 2g9

1

Immunofluorescence Analysis of FRT Tissue

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FRT tissues were embedded in Tissue-Tek OCT (Sakura, Netherlands). Sections were fixed with acetone, and blocked (50 μg/ml mouse IgG and 10% BSA) and stained with: Ly6g 1A8 (Biolegend), F4/80 BM8 (Biolegend), MHCII 2G9 (BD Biosciences), CD31 2H8 (Invitrogen), α-SMA 1A4 (eBioscience), CD62-E (BD Bioscience), CD62P REA344 (Miltenyi Biotec), ICAM-1 M-19 (Santa Cruz Biotechnology), CD106 429 (Miltenyi Biotec). For protein expression quantification, tissues were imaged using the glycerol ACS APO 20x NA 0.60 objective of a confocal fluorescence microscope (SPE, Leica Microsystems), maintaining the acquisition settings all over the process for each sample and among samples, as previously described (19 (link)). Mean fluorescence intensities (MFI) were assessed at multiple regions of interest (ROIs) by field, using the glycerol ACS APO 63x objective and randomly depicted at specific areas of the venular beds in FRT. All quantifications were performed using the FIJI (Fiji Is Just ImageJ) software (NIH).
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2

Phenotyping of Dendritic Cells by FACS

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After homogenizing spleens, cells were treated with erythrocyte lysis buffer, meshed through a 35-μm cell strainer, washed with PBS, and analyzed by FACS.
DCs were phenotyped by using fluorochrome-labeled mAbs directed against CD11c (N418; BioLegend), CD80 (16-10A1; BD Pharmingen, Heidelberg, Germany), CD86 (PO3; Thermo Fisher Scientific), PD-1 (J43, Thermo Fisher Scientific), CTLA-4 (UC10-4B9; BioLegend), CD83 (Michel-19; BioLegend), CD40 (3/23; BioLegend), MHCII (2G9; BD Pharmingen) and PD-L1 (MIH6; AbD Serotec, Puchheim, Germany). Dead cells were excluded using the LIVE/DEAD™ Fixable Blue Dead Cell Stain Kit (Thermo Fisher Scientific). Following mAb labeling for 30 min at 4 °C and final washing, cells were analyzed on an LSR II flow cytometer.
To measure intracellular cytokines, cells were stimulated with PMA and ionomycin (1 μg/ml each; Sigma-Aldrich, Taufkirchen, Germany) for 4 h in the presence of 3 μg/ml Brefeldin A (Thermo Fisher Scientific), labeled for CD11c, subjected to fixation and permeabilization and subsequently stained with mAbs against IL-10 (JES5-16E3; BD Pharmingen) and IL-12 (C15.6; BD Pharmingen). IFN-γ in T cells was measured by using fluorochrome-labeled anti-IFN-γ (XMG-1.2, BioLegend) and counterstaining with anti-CD4 (RM4-5, eBioscience, Frankfurt, Germany).
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3

Multi-color Flow Cytometry Analysis

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All antibodies were purchased from BD Biosciences (San Jose, CA) or eBioscience, Inc. (San Diego, CA) as published (Offner et al 2006b (link), Offner et al 2006c (link)). Four-color (FITC, PE, APC and PI/PerCP/PECy7) fluorescence flow cytometry analyses were performed to determine the phenotypes of splenocytes and brain leukocytes as previously published (Offner et al 2006a (link)). Single-cell suspensions were washed with staining medium (PBS containing 0.1% NaN3 and 0.5% bovine serum albumin, Sigma, Illinois) and incubated with combinations of the following monoclonal antibodies: CD4 (GK1.5, BD Pharmingen), CD8a (53–6.7, BD Pharmingen), CD11b (M1/70, eBioscience), CD45 (Ly-5, BD Pharmingen), CD19 (1D3, BD Pharmingen), CD1d (1B1, BD Pharmingen), CD122 (TM-β1 BD Pharmingen), MHCII (2G9, BD Pharmingen), CD69 (H1.2F3, BD Pharmingen) for 10 min at 4°C. One mL of staining buffer was added to wash the cells. Propidium iodide (PI) was added to identify dead cells whenever only 3 channels on the FACSCalibur were used for detection of fluorescent antibody staining. The FoxP3 staining kit was used according to the manufacturer's protocol (eBioscience) as previously described (Zhang et al 2010 (link)). FACS data acquisition was performed on FACSCalibur flow cytometer (BD Biosciences, San Jose, CA) and data were analyzed using FCS express software (De Novo Software, Los Angeles, CA).
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4

Flow Cytometric Analysis of Mouse Chimerism

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Conjugated antibodies for mouse CD11b (M1/70; BD Biosciences, USA), MHC-II (2G9; BD Biosciences, USA), CD45.1 (A20; Biolegend, USA), Ter119 (TER-119; Biolegend, USA), CD44 (IML; eBioscience, USA) were used in flow cytometry assays. Cells were stained with antibodies, in 100 μl phosphate buffered saline (PBS) containing 0.2% BSA and 0.05% sodium azide for 30 minutes on ice. Flow cytometry was performed on an LSRII flow cytometer using the FACSDiva software (BD, USA); 1 × 104 events were collected per sample, and analyzed using the Flowjo software version 10 (Treestar, Ashland, USA). Percentage chimerism was calculated using the formula, [%mCD45.1Ter119/(mCD45.1Ter119 + mCD45.1+Ter119)].
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5

Characterizing Immune Cell Profiles in Lung and Lymph Nodes

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BALF as well as single-cell suspensions from both the right and central lobes and from draining mediastinal lymph nodes (MLN) were obtained as previously reported [21 (link)]. Antibodies are anti- CD4 (RM4-5) (eBioscience); CD8a (53–6.7), CD11c (N418), CD19 (6D5), CD90.2 (30-H12), Ki-67 (16A8) (Biolegend); MHC-II (2G9) (BD Biosciences). Viability was assessed using annexin V (Biolegend) and LIVE/DEAD (Life Technologies). Fluorescence and autofluorescence (AF) were acquired using a Diva-driven LSRFortessa (Becton Dickinson) and analyzed with the FlowJo software (Tree Star inc). To compute the total numbers of cell subsets, absolute cell counts obtained with a hemocytometer were multiplied by cell frequencies obtained either by flow cytometry or following differential cell counts as previously reported [17 (link),21 (link)]. For cytokine quantification, cell-free BALF were concentrated with Amicon 3 K (Millipore) and incubated with cytometric bead array Flex Set for interleukin (IL)-5, IL-13 and CCL5 according to the manufacturer’s instructions (BD Biosciences).
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6

Immunofluorescence Staining of Tumor Samples

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For immunofluorescence experiments, tumors were harvested, washed, and fixed in Antigenfix solution (Diapath) for 2 h with agitation. After several steps of PBS 1X washing, samples were placed in PBS containing 30% sucrose overnight and included in OCT. After saturation with PBS 2% BSA, samples were stained by overnight incubation at 4°C with anti-CD8b (Clone 53–5.8; BioXcell) and MHC-II (2G9; BD-Pharmingen) mAbs. After incubation with donkey anti-rabbit Cy3 serum and streptavidin Alexa488 (BioLegend), samples were mounted in a mounting medium. Images were acquired using a Zeiss LSM780 confocal microscope and analyzed using ZEN 2.3 software.
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