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1 1 dioctadecyl 3 3 3 3 tetramethylindocarbocyanine perchlorate dii

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1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI) is a fluorescent dye used for labeling lipophilic structures. It can be used to stain cell membranes and track the movement of cells or cellular components.

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34 protocols using 1 1 dioctadecyl 3 3 3 3 tetramethylindocarbocyanine perchlorate dii

1

Encapsulation of Nanoparticles in Liposomes

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NP-liposomes were prepared using a reverse-phase evaporation method40 (link) to ensure maximum encapsulation of NPs into liposomes. One hundred μL of DNA-NPs (3 nM) were combined with 200 μL of a 12.5 mg mL −1 lipid solution in chloroform. The lipid mixture contained 98% (w/w) 1-palmitoyl-2-oleoyl-sn-gly-cero-3-phosphocholine (POPC) and 2% (w/w) 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(cap biotinyl) sodium salt (Avanti Polar Lipids Inc., Alabaster, AL, USA). For the colocalization experiments, the lipid mix also contained 2% (w/w) 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI; Invitrogen, Carlsbad, CA, USA), and the POPC content was reduced to 96%. The two-phase mixture was sonicated with a probe sonicator for 30 s. Then, chloroform was removed in vacuum on a rotary evaporator. The resulting viscous solution was diluted with P50 buffer and extruded through a 200-nm pore size polystyrene membrane with a mini extruder set (Avanti Polar Lipids Inc.). After the extrusion, the liposome solution was centrifuged at 100 g for 30 min to collect the formed NP-containing liposomes.
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2

Liposome Encapsulation of DNA Nanoparticles

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NP-liposomes were prepared using a reverse-phase evaporation method40 (link) to ensure maximum encapsulation of NPs into liposomes. One hundred μL of DNA-NPs (3 nM) were combined with 200 μL of a 12.5 mg mL−1 lipid solution in chloroform. The lipid mixture contained 98% (w/w) 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 2% (w/w) 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(cap biotinyl) sodium salt (Avanti Polar Lipids Inc., Alabaster, AL, USA). For the colocalization experiments, the lipid mix also contained 2% (w/w) 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI; Invitrogen, Carlsbad, CA, USA), and the POPC content was reduced to 96%. The two-phase mixture was sonicated with a probe sonicator for 30 s. Then, chloroform was removed in vacuum on a rotary evaporator. The resulting viscous solution was diluted with P50 buffer and extruded through a 200-nm pore size polystyrene membrane with a mini extruder set (Avanti Polar Lipids Inc.). After the extrusion, the liposome solution was centrifuged at 100 g for 30 min to collect the formed NP-containing liposomes.
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3

Preparation and Characterization of Influenza Virus Mutants

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Two Udorn mutants were prepared according to previous works: Udorn with an HA mutation for preferential α2,3-Sia binding (Ud23), and Udorn with an HA mutation for preferential α2,6-Sia binding (Ud26)20 (link),39 (link). Ud23 has two mutations in the receptor binding domain, L226Q and S228G, while Ud26 has a single mutation in the receptor binding domain, E190D20 (link). Udorn IAV was labeled with a lipophilic dye, 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI; Invitrogen) while Ud23 and Ud26 IAV were labeled with a different lipophilic dye with a longer excitation and emission wavelength, 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindodicarbocyanine 4-chlorobenzenesulfonate salt (DiD; Invitrogen). IAV sizes were determined (Figure S4) via dynamic light scattering (DLS) using the NanoBrook Omi (Brookhaven Instruments).
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4

Tumor Cell Invasion Assay

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The invasion assay was performed using Millicell™ hanging cell culture inserts (polyethylene terephthalate (PET) membranes with 8 μm pores) (Millipore). HMEC-1 cells (1 × 105 cells per well) were plated on the upper chamber and allowed to grow to confluence, and then 10% Matrigel was loaded into the chamber. Tumor cells were treated with 50 ng/ml EGF in serum-free medium and then stained with 1,1′-dioctadecyl-3,3,3′,3′-tetramethyl-indocarbocyanine perchlorate (DiI) (Invitrogen) for 30 min. DiI-stained tumor cells (2 × 105) were then loaded into the chamber, which was filled with serum-free medium, and incubated for 2 days. Cells on the apical side of each insert were scraped off. Invasion to the basolateral side of the membrane was visualized using an immunofluorescent microscope. The number of invading cells was determined in three randomly chosen fields under the microscope for three independent experiments.
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5

Evaluating Tumor Cell Invasion Using an In Vitro Assay

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The invasion assay was performed using Millicell™ hanging cell culture inserts (polyethylene terephthalate (PET) membranes with 8 μm pores) (Millipore). HMEC-1 cells (1 × 105 cells per well) were plated on the upper chamber and allowed to grow to confluence, and then 10% Matrigel was loaded into the chamber. Tumor cells were treated with 50 ng/ml EGF or 10 μM PGE2 in serum-free medium and then stained with 1,1′-dioctadecyl-3,3,3′,3′-tetramethyl-indocarbocyanine perchlorate (DiI) (Invitrogen) for 30 min. DiI-stained tumor cells (2 × 105) were then loaded into the chamber, which was filled with serum-free medium, and incubated for 2 days. Cells on the apical side of each insert were scraped off. Invasion to the basolateral side of the membrane was visualized using an immunofluorescent microscope. The number of invading cells was determined in three randomly chosen fields under the microscope for three independent experiments.
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6

Lipid-Based Nanoparticle Formulation Protocol

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Hydrogenated soy phosphatidylcholine (HSPC) and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-n-[methoxy(polyethylene glycol)-2000] (mPEG2000-DSPE) were generously donated by NOF (Tokyo, Japan). Cholesterol (CHOL) was purchased from Wako Pure Chemical (Osaka, Japan). S-1, an oral fluorouracil antitumor drug that contains three pharmacological agents (tegafur, 5-chloro-2, 4-dihydroxypyridine, and potassium oxonate) was generously donated by Taiho Pharmaceutical (Tokyo, Japan). 1,1′-Dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI) and 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindodicarbocyanine perchlorate (DiD) were purchased from Invitrogen (Paisley, UK). Fluorescein isothiocyanate (FITC)-labeled rabbit anti-rat CD31 IgG heavy and light chain polyclonal antibody was purchased from Abcam (Cambridge, UK). Hoechst 33342 and 3,3′- diheptyloxacarbocyanine iodide (DiOC7) were purchased from AnaSpec (Freemont, CA, USA). FITC-dextran (M.W. 150,000) and Drabkin’s reagent was purchased from Sigma-Aldrich (St Louis, MO, USA). In Situ Cell Death Detection Kit (TMR red) was purchased from Roche Diagnostics (Indianapolis, IN, USA). All other reagents were of analytical grade.
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7

Fluorescent Lipid Labeling Techniques

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Alexa Flour 647, 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI) was obtained from Invitrogen. Sephadex G-25 fine resin, egg phosphatidylcholine (PC), cholesteryl oleate, sodium cyanoborohydride (NaCNBH3), triethylamine (TEA), 3-aminopropyl-triethoxysilan (APTES), ethanolamine (ETA), sodium deoxycholate and HEPES were from Sigma. 1,2-Dioleoyl-sn-glycero-3-phosphocholine (DOPC) was purchased from Avanti Polar Lipids. Cholesterol linked to boron dipyrromethene difluoride at sterol carbon-24 (cholesterol- Bodipy; C-Bodipy) was synthesized as described23 (link). Cholesteryl-ester- Bodipy (CE-Bodipy) was synthesized by conjugating linoleic acid to C-Bodipy as described24 .
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8

Preparation and Characterization of Cyclosporin A Lipid Nanoparticles

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Cyclosporin A (CsA) was obtained from Pharma Stulln GmbH (Stulln, Germany). Kolliphor® HS15 was obtained from BASF. Lipoid® S75-3 was obtained from Lipoid GmbH (Ludwigshafen, Germany). Miglyol® 812 (MCT) was purchased from Caesar & Loretz GmbH (Hilden, Germany). 1,1′-Dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI) was purchased from Invitrogen (Thermo Fisher Scientific, Waltham, MA, USA). 1,2-Distearoyl-sn-glycero-3-phosphoethanolamine-N[maleimide(polyethyleneglycol)-2000] (ammonium salt) (DSPE-PEG2000-maleimide) was purchased from Avanti Polar Lipids Inc. (Alabaster, AL, USA) and cyclo(-Arg-Gly-Asp-D-Phe-Cys) acetate salt (RGD) from Bachem Distribution Service GmbH (Weil a. Rhein, Germany). Dulbecco’s phosphate-buffered saline (PBS) was acquired from Gibco® Life Technologies (Waltham, USA). Purified water was obtained from a Milli-Q System from Millipore (Schwalbach, Germany). All other materials and reagents in analytical grade were obtained from Merck (Taufkirchen, Germany).
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9

Membrane Staining of CHO-K1-hM4R Cells

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CHO-K1-hM4R cells were grown as described above and seeded with a density of 25 000 cells per well into a µ-Plate 96 well Black plate (Ibidi, Gräfelfing, Germany) 5 h before the experiment. A stock solution of 1 mM 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI) (Invitrogen, Eugene, Oregon, USA) in DMSO stored at −20°C was thawed and sonicated in an ultrasound bath for 5 min to disrupt aggregates. Cell medium was removed and replaced with 200 µl per well of 2 µM DiI in Dulbecco's phosphate-buffered saline (DPBS) with Mg2+ and Ca2+ (Sigma-Aldrich) to stain the cell membranes. The cells were incubated with the solution for 10 min before imaging. The cells were imaged with Cytation 5 cell imaging multi-mode plate reader equipped with 20X LUCPLFLN objective (Olympus) from Bright-field and RFP channels (LED light source with excitation filter 531(40) nm and emission filter 593(40) nm for RFP channel (BioTek Instruments) with the following parameters for bright-field: LED intensity = 4, integration time = 110 ms, camera gain = 24 and for RFP fluorescence channel: LED intensity = 1, integration time = 71 ms, camera gain = 24. The cells were imaged in the montage mode (196 locations) with Z-stack (10 planes, 4 planes below and 5 planes above focus) to cover any imaging location-dependent variability and simulate potential autofocusing errors.
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10

PLGA-Based Fluoxetine Hydrochloride Formulation

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Fluoxetine hydrochloride (FH) (MW: 345.79) was kindly provided by Delta Pharma for the Pharmaceutical Industry, Egypt. Poly lactide co glycolic acid (PLGA) 50/50 DL-lactide/glycolide with an inherent viscosity midpoint of 0.2 dL/g was kindly supplied from Purac Biomaterials, the Netherlands. Acetonitrile (HPLC grade), Ethanol absolute, Lecithin soybean (LEC) (3-sn-Phosphatidylcholine ≥ 99% (TLC) lyophilized powder), Triethylamine, Fetal bovine serum (FBS), and Dimethylsulphoxide (DMSO) were purchased from Sigma Aldrich, USA. Hydrochloric acid, potassium chloride, potassium dihydrogen orthophosphate, sodium chloride, sodium dibasic hydrogen orthophosphate, sodium hydroxide, and Tween 80 were purchased from Fluka Chemika-BioChemika, Switzerland. Triton™ X-100, 1,1′-Dioctadecyl-3,3,3′,3′-Tetramethylindocarbocyanine Perchlorate (DiI), and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from ThermoFisher Scientific, UK. Dulbeccós Modified Eaglés Media (DMEM), L-glutamine, penicillin, streptomycin, and trypsin-EDTA were purchased from Gibco, Invitrogen, UK. Human lung fibroblast (CCD-19Lu) cells (catalog number ATCC® CCL-210™) were purchased from The American Type Culture Collection (ATCC, UK).
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