The largest database of trusted experimental protocols

17 protocols using trans zeatin

1

Inducing PhoPQ and AHK4-PhoQ Fusion Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
To induce PhoPQ, cells were grown to mid-exponential phase (OD600 ~ 0.5) in M9 before being washed once with M9 containing 0 mM MgSO4 and diluted 1:100 into M9 containing 10 μM MgSO4 (for ON/induction) or 50 mM MgSO4 (for OFF/repression). Cells were grown for 6 hr, diluted 1:50 into PBS with 0.5 g/L kanamycin, and fluorescence measured on a Miltenyi MACSQuant VYB. An identical procedure was used to induce AHK4-PhoQ fusions, except cells were grown in M9 containing 2 mM MgSO4 and 1 nM aTc (anhydrotetracycline, Sigma) at all times, with the ON condition containing 1 μM trans-zeatin (Sigma) and the OFF condition containing no trans-zeatin. In each cytometry experiment, three replicates of each sample were induced independently and 20,000 cells were measured per replicate. FlowJo was used to analyze the data, gating on single, live cells and extracting the geometric mean of the YFP distribution (Extended Data Fig. 2j). Error bars indicate the standard deviation of the geometric means measured in each replicate.
+ Open protocol
+ Expand
2

Inducing PhoPQ and AHK4-PhoQ Fusion Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
To induce PhoPQ, cells were grown to mid-exponential phase (OD600 ~ 0.5) in M9 before being washed once with M9 containing 0 mM MgSO4 and diluted 1:100 into M9 containing 10 μM MgSO4 (for ON/induction) or 50 mM MgSO4 (for OFF/repression). Cells were grown for 6 hr, diluted 1:50 into PBS with 0.5 g/L kanamycin, and fluorescence measured on a Miltenyi MACSQuant VYB. An identical procedure was used to induce AHK4-PhoQ fusions, except cells were grown in M9 containing 2 mM MgSO4 and 1 nM aTc (anhydrotetracycline, Sigma) at all times, with the ON condition containing 1 μM trans-zeatin (Sigma) and the OFF condition containing no trans-zeatin. In each cytometry experiment, three replicates of each sample were induced independently and 20,000 cells were measured per replicate. FlowJo was used to analyze the data, gating on single, live cells and extracting the geometric mean of the YFP distribution (Extended Data Fig. 2j). Error bars indicate the standard deviation of the geometric means measured in each replicate.
+ Open protocol
+ Expand
3

HPLC-MS Chemical Standards Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
High-performance liquid chromatography (HPLC) grade acetonitrile, methanol, and water were purchased from Burdick & Jackson (Morristown, NJ). The mass spectrometry grade formic acid and internal standards, including N-acetyl L-aspartic acid-d3, L-tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, 15N anthranilic acid, and testosterone-d3, were purchased from Sigma-Aldrich (St.Louis, MO). The ESI-L Low Concentration Tuning Mix (Agilent Technologies, Santa Clara, CA) was used to calibrate the mass spectrometer.
+ Open protocol
+ Expand
4

Quantification of Plant Metabolites

Check if the same lab product or an alternative is used in the 5 most similar protocols
LC-MS grade methanol (LC-MS LiChrosolv®, Merck (≥99.97%), formic acid (98–100%), water (LC-MS Chromasolv), trans-zeatin (≥97%), solasodine (≥95%), tomatidine hydrochloride (≥85%), α-solanine (≥95%), solanidine (≥95%), phenylalanine (≥98%), tyrosine (≥98%), tryptophan (≥95%), methyl dihydrojasmonate (≥96%), and DMSO (≥99.9%) were purchased from Sigma-Aldrich (St. Louis, MO, United States) and α-chaconine (≥95%) (PhytoLab, Germany).
+ Open protocol
+ Expand
5

Comprehensive Metabolite Analysis by HPLC-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
High-performance liquid chromatography (HPLC)-grade ammonium acetate from Sigma, acetonitrile, methanol, chloroform, and water were procured from Burdick & Jackson (Morristown, NJ). Mass spectrometry-grade formic acid was purchased from Sigma-Aldrich (St Louis, MO).) Metabolite standards and internal standards, including N-acetyl Aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, 15N anthranilic acid, and Testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO).
+ Open protocol
+ Expand
6

Metabolite Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
HPLC grade ammonium acetate, acetonitrile, methanol, chloroform, ethanol, hexane, and water were procured from Burdick & Jackson (Morristown, NJ). MS grade formic acid, standard compounds and isotope labeled standards, including N-acetyl aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, 15N anthranilic acid, and testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO).
+ Open protocol
+ Expand
7

HPLC-MS Metabolite Quantification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
High-performance liquid chromatography (HPLC) grade acetonitrile, methanol and water were purchased from Burdick & Jackson (Morristown, NJ). Mass spectrometry grade formic acid and internal standards namely, Tryptophan-15N2, Glutamic acid-d5, Thymine-d4, Gibberellic acid, Trans-Zeatin, Jasmonic acid, Anthranilic acid, and Testosterone-d3 were purchased from Sigma- Aldrich (St.Louis, MO). The calibration solution containing multiple calibrants in acetonitrile/trifluroacetic acid /water was purchased from Agilent Technologies (Santa Clara, CA).
+ Open protocol
+ Expand
8

Quantifying endogenous cytokinins in cotton

Check if the same lab product or an alternative is used in the 5 most similar protocols
The concentration of endogenous cytokinins was determined in the abscission zones in X50, X33, the GhCKX3-RNAi transgenic lines (CR-3, CR-13), and the WT control line. The experiments were performed as described previously (Zeng et al., 2012 ) with modifications. Samples were extracted in 80% cold methanol overnight at 4 °C, which contained [2H5] trans-Zeatin (Olchemim, Olomouc, Czech Republic) and [2H6] N6-isopentenyladenine (Olchemim) as internal standards. After centrifugation at about 13 200 g for 15 min at 4 °C), the supernatant was passed through Oasis HLB columns (Waters). The filtered liquid was then evaporated using N2, dissolved in 2 ml 1% formic acid, and passed through Oasis MCX columns (Waters). The columns were first washed with 2 ml methanol, and then washed with 2 ml 0.35 M NH4OH. Finally, the columns were washed with 0.35 M NH4OH in 60% methanol and the elution was collected and evaporated using N2. The residue was dissolved in 100 μl 50% acetonitrile and stored at –80 °C until measurement. Cytokinins were quantified using a HPLC-MS/MS system with trans-Zeatin (Sigma) as the external standard.
+ Open protocol
+ Expand
9

Electrotropism Assay for Arabidopsis Seedlings

Check if the same lab product or an alternative is used in the 5 most similar protocols
Both the 1× MS agar medium (0.44% MS Basal medium, 0.5% sucrose, 0.05% MES hydrate, pH adjusted to 5.7 with Tris–HCl, 0.8% agar) contained in the PCR tubes, and the 1/500× MS liquid medium (0.00088% MS Basal medium, 0.5% sucrose, 0.05% MES hydrate, pH adjusted to 5.7 with Tris–HCl) in the nurseries, were supplemented with 10 nM trans-zeatin (Sigma–Aldrich Z0876) as previously suggested (Miyawaki et al., 2006 (link)). Still in their PCR tubes, seedlings were transferred into V-boxes, filled with 1/500× MS liquid medium supplied with 10 nM trans-zeatin to conduct the electrotropism experiments.
Sample sizes N and number of replicates R were the following: WT + tZ, N = 14, R = 3; cyp735a1 +tZ at 1.5 V/cm, N = 13, R = 3; cyp735a1 +tZ at 0 V/cm, N = 14, R = 3.
+ Open protocol
+ Expand
10

Germination and Seedling Growth of Wild Olive

Check if the same lab product or an alternative is used in the 5 most similar protocols
Seeds (n = 500) of Olea europaea subsp. europaea var. sylvestris were collected from sylvestris plants growing in open field at the locality “Pietra del Demanio” in Cosenza, Italy, and vernalized for 3 weeks at 4°C [26 ]. After mechanical removal of endocarp, they were soaked for two days, sterilized with 70% alcohol for 1 min and then treated with sodium hypochlorite 5% (v/v) plus tween 20 0.1% (v/v) for 12 min. Seeds were rinsed five times with sterile distilled water, treated with the “Plant Preservative Mixture” (PPM) 1.5% (v/v) (Micropoli, Milan, Italy), supplemented with 50 mg/L of magnesium salts (chloride magnesium, sulphate magnesium, and nitrate magnesium). The PPM treatment was performed for 7 hours under continuous stirring. Finally, seeds were placed in culture on a substrate consisting of sterile water and bacto-agar 0.7% (w/v), pH 5.8. Seeds were kept at 24 ± 1°C under 16 h light per daily photoperiod. Irradiance intensity during the light period was 55 μmol m−2 s−1 PAR obtained by a cool-light fluorescent lamps. To induce a rapid vegetative growth, after 30 days of culture, root-excised seedlings were transferred to olive medium (OR) [27 ], enriched with 30 g L−1 mannitol, 5 mg/L (23 μM) trans-zeatin (Sigma, Milan, Italy), 0.8 g L−1 bacto-agar, and 0.1%. PPM [27 , 28 ]. This medium was named ORZ5.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!