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8 protocols using lipopolysaccharide lps from e coli 0111 b4

1

Spectrophotometric and Flow Cytometric Analysis

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Absorbances were measured using a scanning multi-well spectrophotometer (Multiskan spectrum, Thermo Fisher Scientific, Waltham, MA, USA). Fluorescence intensity was measured by a FACSCanto II flow cytometer (Bd Biosciences, San Jose, CA, USA) and calibrating using FACSCanto II analyzer software (Bd Biosciences, San Jose, CA, USA). Gene expression was determined by means of a CFX96 Real-Time PCR system (Bio-Rad, Hercules, CA, USA). DMEM medium, fetal bovine serum (FBS), penicillin, streptomycin, and trypsin were purchased from Biowest (Nuaillé, France). Lipopolysaccharide (LPS) (from E. coli 0111:B4) was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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2

Siglec-TLR Interaction Analysis

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Recombinant proteins consisting of human IgG Fc and extracellular domains of human SIGLEC1, 2, 3, 5, 6, 7, 9, 10, 11, and mouse Siglec1, 2, E, F were purchased from R&D Systems (Minneapolis, MN). Recombinant mouse Siglec3-hIgGFc was purchased from Sino Biological, Inc. (Beijing, China) and anti-mouse TLR4 (MTS510) from Biolegend (San Diego, CA). Anti-human TLR4 and Anti-Siglec-E were from R&D. Anti-mouse CD11c, CD11b, CD4, CD8, B220 and Gr1 were purchased from eBioscience (San Diego, CA). Anti-Neu1 (H-300) and anti-Neu3 (M-50) antibodies and Horseradish perioxidase conjugated anti-mouse, anti-goat or anti-rabbit secondary-step reagents, as well as anti-TLRs antibodies that are cross-reactive for mouse and human TLR1 (H-90), TLR2 (A-9), TLR3 (M-300), TLR5 (M-300), TLR6 (N-18), TLR7 (N-20), TLR8 (H-114), TLR9 (H-100) and TLR10 (V-20) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA) and biotinylated for studies used in Figure 1A,B. Lipopolysaccharide (LPS, from E. coli 0111:B4) was from Sigma. E. coli (strain 25922) was obtained from ATCC (Manassas, VA). Neu5Ac2en and Neu5Gc2en were synthesized as described (Li et al., 2008 (link), 2011 (link)).
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3

Asbestos and Carbon Nanotube Exposure Protocol

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We obtained asbestos (crocidolite, amosite and chrysotile) from the Union for International Cancer Control (UICC; Geneva, Switzerland) and suspended it in 0.9% saline (5 mg/ml). We obtained MWCNTs and suspended them in 0.5% bovine serum albumin (BSA) (5 mg/ml in saline) as described.(10 (link),11 (link)) The carbon nanotubes were distinguished as CNT-50, CNT-115, CNT-145 and CNT-tngl to represent the diameter of each nanotube (Table 1). Zymosan (Sigma-Aldrich, St. Louis, MO) and lipopolysaccharide (LPS) from E. coli 0111:B4 (Sigma-Aldrich) were used to initiate inflammation. Deferoxamine mesylate (DFO) from Sigma-Aldrich and nitrilotriacetate disodium salt from Nakalai Tesque (Kyoto, Japan) were used at a final concentration of 40 µM.
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4

Radioligand Binding Assay for Beta-Adrenergic Receptors

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[3H]-CGP12177 (specific activity 30-60 Ci/mmol, PerkinElmer, USA). Isoproterenol (ISO), atenolol, alprenolol, ICI 118,551 and lipopolysaccharide (LPS, from E. coli0111:B4) (Sigma, St. Louis, MO, USA). Dulbecco's modified Eagle's medium (DMEM) and trypsin (HyClone, Thermo Scientific, Beijing, China), and fetal bovine serum (FBS, Gibco, Invitrogen, Carlsbad, USA). Dynabeads® Sheep anti-Mouse IgG (Invitrogen, Carlsbad, USA). Antibodies against Rab5a (Abcam Hong Kong Ltd, China). Antibodies against phospho-ERK1/2, total ERK1/2 and CD31 (Santa Cruz Biotechnology, Inc., CA). Biotin conjugated BSA (biotin-BSA, Thermo Scientific Pierce Biotechnology, IL, USA).
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5

Eel Immunological Challenges Protocol

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Adult eels (Anguilla anguilla) of about 200g (±25g) were purchased from a commercial fishery, Valenciana de acuicultura (Puçol, Valencia). Fish were maintained in our facilities in recirculating water at 15°C under a photoperiod of 12:12 (light:dark). They were acclimated to laboratory conditions for at least 15 days before experimentation. All experiments described comply with the guidelines of the European Union Council (2010/63/EU) for the use of laboratory animals and have been approved by the Department of Environment of the Generalitat de Valencia under the reference code 2014/pesca/RGP/028. Eels were divided into 4 different tanks, 5 individuals per tank. Three different experimental challenges were carried out (1 challenge/tank), which consisted of an intraperitoneal (ip) administration of 250 μl maximum volume of either; 6 mg/kg of lipopolysaccharide (LPS) from E. coli 0111:B4 (Sigma-Aldrich), 1 mg/kg of peptidoglycan (PGN) from E. coli 0111:B4 (Invivogen) or 3 mg/kg of poly I:C (Invivogen). Control individuals were injected via the intraperitoneal route with 250 μl of saline buffer. At 12 h post-treatment eels were killed by an overdose of benzocaine (Sigma-Aldrich) and liver, spleen and head-kidney were immediately dissected under sterile conditions and frozen in liquid nitrogen.
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6

Spectrophotometric analysis of cell lines

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A scanning multi-well spectrophotometer (Multiskan spectrum, Thermo Fisher Scientific, Waltham, MA, USA) was utilized to measure absorbances. RPMI 1640 medium, fetal bovine serum (FBS), penicillin, streptomycin and phosphate buffered saline (PBS) were purchased from Biowest (Nuaillé, France). Lipopolysaccharide (LPS) (from E. coli 0111:B4) and phorbol 12-myristate-13-acetate (PMA) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Evaluating NF-κB/AP-1 Transcription Factor Activity

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The activity of transcription factors NF-κB/AP-1 was evaluated using the THP-1-XBlueTM-MD2-CD14 cell line [obtained from Invivogen (San Diego, CA, USA)], expressing an NF-κB/AP-1-inducible secreted embryonic alkaline phosphatase (SEAP) reporter gene, as was described previously [54 (link),59 (link)]. The complexes 15 were applied to the cells at the concentrations of 200 nM and 50 nM, pomiferin (at 200 nM), and a reference drug prednisone at 1 μM, respectively. Lipopolysaccharide (LPS) from E. coli 0111:B4 (Sigma-Aldrich) dissolved in PBS was used to trigger an inflammation-like reaction. The activity of the SEAP was determined by Quanti-BlueTM reagent (Invivogen, San Diego, CA, USA) according to the manufacturer’s instructions 24 h after lipopolysaccharide stimulation. The activity of NF-κB/AP-1 was determined spectrophotometrically using the FLUOstar Omega microplate reader (BMG Labtech, Ortenberg, Germany) at 655 nm and compared with that of the vehicle.
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8

Inflammatory Response Regulation Protocol

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Lipopolysaccharide (LPS, from E. coli 0111:B4) was purchased from Sigma Chemical Co. (St. Louis, MO, USA). Murine interferon-γ (IFNγ) was purchased from R&D Systems (Minneapolis, MN, USA). Fetal bovine serum (FBS) was from Thermo Scientific (Logan, Utah, USA). Antibodies used for Western blotting include: goat anti-rabbit IgG-horseradish peroxidase, goat anti-mouse IgG-horseradish peroxidase, and iNOS polyclonal from Santa Cruz Biotechnology (Santa Cruz, CA USA); phospho- and total-ERK1/2 antibodies from Cell Signaling Technology (Danvers, MA, USA); phospho-STAT1α antibody from Thermo Fisher Scientific (Rockford, IL, USA); and total-STAT antibody from Millipore (Billerica, MA, USA). The 5-(and-6)-chloromethyl-2’,7’-dichlorodihydrofluorescein diacetate, acetyl ester (CM-H2DCFDA) for ROS detection was purchased from Invitrogen, Inc. (Carlsbad, CA, USA). For the cytokines and chemokines analysis, a Multi-Plex kit (Cat. MCYTOMAG-70K-PMX) was obtained from EMD Millipore (Billerica, MA, USA). Protease inhibitor cocktail (P8340) was purchased from Sigma (St. Louis, MO, USA).
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