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Hitrap q ff column

Manufactured by GE Healthcare
Sourced in United States, Japan, United Kingdom, Sweden

The HiTrap Q FF column is a strong anion exchange chromatography column designed for the purification of biomolecules. It features a high-capacity quaternary ammonium (Q) ligand immobilized on a sepharose-based matrix. The column is well-suited for the capture and separation of negatively charged molecules such as proteins, peptides, and nucleic acids.

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34 protocols using hitrap q ff column

1

Purification of ChSase AC II Enzyme

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The cells were centrifuged at 4 °C and 10,000 rpm for 10 min, and the fermentation supernatant was filtered using 0.22 μm filters. ChSase AC II was purified using a HiTrap QFF column (GE Healthcare, USA). The purity of the fractions was assessed using SDS-PAGE, and the protein concentration was determined using Coomassie Brilliant Blue staining.
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2

Recombinant Protein Expression and Purification

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We optimize the candidate protein gene sequences for expression in E. coli with an added poly-his tag and TEV protease site at the N-termini and clone the genes into the pET14B vector for expression in the E. coli strain BL21 (DE3) pLysS. We grow the cells in both standard LB (Smu. 1393c and phosphoribosyl isomerase) and super broth (antigen 85-A). For the case of the catalytically active Smu. 1393c, we grow the cells in standard LB with 0.5 mM ZnCl2. In all cases, we induce expression with 1 mM Isopropyl β-D-1-thiogalactopyranoside (IPTG) at 25 °C overnight for phosphoribosyl isomerase and Smu. 1393c, and 72 hours at 18 °C for antigen 85-A. The collected cells are stored at −80 °C until use.
To purify we defrost the cell pellets on ice and resuspend in buffer A (50 mM phosphate pH 7.4, 500 mM NaCl, 40 mM imidazole, 5 mM βME, and 0.1 μM Pepstatin A). We use sonication to lyse the cells and centrifuge them in a Beckman J-20 rotor at 15,000 g for 2 hours. We collect and filter the supernatant through a 0.22 μm filter before loading on a 5 mL HisTrap FF column from GE. We elute the protein with a gradient to buffer B (50 mM phosphate pH 7.4, 150 mM NaCl, 1 M imidazole). We then dialyze the proteins against 20 mM Tris pH 7.4 and elute from a HiTrap Q FF column from GE. We perform all column runs using a BioRad BioLogic low-pressure chromatography machine.
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3

Purification of Recombinant PsOep23 Protein

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PsOep23 inclusion bodies were solubilized in 50 mM Tris–HCl pH 8.0, 100 mM NaCl, 8 M urea for 1 h at room temperature. Insoluble material was removed by centrifugation at 20,000 g for 15 min and supernatant containing PsOep23 (equiv. to 150 μg protein) was further purified using a 5 ml HisTrap HP column (GE Healthcare, Germany). Bound PsOep23 was washed with five column volumes (CV) of 50 mM Tris–HCl pH 8.0, 100 mM NaCl, 8 M urea buffer containing 35 mM imidazole. Elution was performed by raising the imidazole concentration to 500 mM.
Fractions enriched in PsOep23 were diluted 20-fold in 100 mM Tris–HCl pH 8.0, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100 and further purified using Strep-Tactin affinity matrix. In brief, the protein was allowed to bind to Strep-Tactin Sepharose (iba, Germany) overnight at 4°C followed by washing with 100 mM Tris–HCl pH 8.0, 150 mM NaCl, 1 mM EDTA, 0.1% CHAPS. Protein elution was achieved by 2.5 mM desthiobiotin (iba) at 4°C for 30 min.
In a second approach nickel affinity purified PsOep23 was subjected to buffer exchange in 20 mM sodium phosphate pH 7.0, 8 M urea using Amicon centrifugal filters (MWCO 10 kDa, Merck). The PsOep23 sample was loaded onto a HiTrap Q FF column (GE Healthcare) and flow-through was collected.
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4

Protein Purification via Strong Anion Exchange

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Supernatants from the optimal precipitation step were pooled, exchanged by diafiltration into 100 mM pH 2.73 citrate buffer containing 50 mM ammonium sulfate (sample buffer) and stored at 4°C prior to chromatography. Strong anion exchange FPLC was performed in flowthrough mode using a 5 mL HiTrap§ Q FF column on an AKTA Pure instrument (GE Healthcare Life Sciences, Marlborough, MA). The flow path and column were equilibrated with 8 column volumes of sample buffer, followed by manual washing and equilibration of the 500 μL sample loop, injection of 1000 μL of sample at a flow rate of 10 mL/min, and a further wash with sample buffer at a flow rate of 10 mL/min. A single peak was observed to flow through immediately and was collected for analysis.
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5

Purification of Alpha-1-Acid Glycoprotein

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AGP was purified from human plasma fraction V that provided by KAKETSUKEN, Kumamoto, Japan. Fraction V was dissolved in acetate buffer (10 mM) and applied to a HiTrap CM FF column (5 mL) and a HiTrap Q FF column (5 mL) on an AKTAprime Plus System (GE Healthcare, Tokyo, Japan). Bound material was subsequently eluted with acetate buffer (10 mM) containing NaCl (0.5 mol/L) at a flow rate of 5 mL/min. The eluate was dialyzed against deionized water at 4 °C, freeze-dried and stored at −20 °C. The purified protein was confirmed as AGP by Western blotting.
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6

Lipid-loaded CD1a Tetramer Preparation

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Soluble mammalian CD1a samples were enzymatically biotinylated using BirA biotin ligase. Endogenous CD1a tetramers were prepared by mixing Streptavidin-PE (BD-biosciences) with biotinylated CD1a in a 1:4 molar ratio. Phosphatidylcholine (PC) (1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine), sphingomyelin (SM) (N-nervonoyl-D-erythro-sphingosylphosphorylcholine), sulfatide (3-O-sulfo-D-galactosyl-ß1–1’-N-nervonoyl-D-erythro-sphingosine) and lysophosphatidylcholine (LPC) (1-oleoyl-2-hydroxy-sn-glycero-3-phosphocholine) were all purchased from Avanti Polar Lipids. PC, SM and sulfatide were prepared in 0.5% tyloxapol (Sigma) tris buffered saline (TBS) pH 8.0. LPC was prepared in aqueous solution or aqueous 0.5% tyloxapol. Prior to the production of lipid-loaded tetramers, biotinylated CD1a was loaded overnight with PC (1:6 molar ratio), LPC (1:5, 1:25, 1:50, 1:150 and 1:450 molar ratio) or SM (1:3, 1:6, 1:12 and 1:24 molar ratio). CD1a tetramer positive cells were co-stained with CD3 (clone UCHT1, BD biosciences) and analysed using a LSR Fortessa (BD sciences). Data was processed using FlowJo software (Tree Star Inc.). Loading of CD1a with LPC for crystallographic studies was performed by mixing CD1a with LPC in a 1:60 molar ratio, incubating overnight at room temperature and excess lipid and detergent removed using a HiTrap Q FF column (GE healthcare).
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7

Purification of Hexahistidine-tagged hWH

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FEN1 was purified using a published protocol [54 (link)] with a construct kindly provided by Dr. Robert Bambara. For purification of hWH, we made a vector with hWH cDNA inserted into pET23b (Novagen, Madison, WI, US) carrying a hexahistidine tag at its C-terminus, and transformed it into
BL21(DE3)pLysS. Expression of hWH was induced by 1 mM IPTG at 37°C for 4 h. The cell pellet was lysed with a buffer containing 20 mM Tris pH 8.0, 300 mM NaCl, 5 mM β-mercaptoethanol, 10% glycerol, 20 mM imidazole, and protease inhibitor cocktail. The soluble fraction was applied to the HisTrap FF Crude column (GE, Waukesha, WI, US), and hWH was eluted with 200 mM imidazole. The pooled factions were applied to a Hitrap Q FF column (GE), and eluted by a NaCl gradient from 0.05–1 M with hWH peaked at 0.3 M NaCl. The pooled fractions were dialyzed in a buffer containing 20 mM Tris pH 8.0, 0.3 M NaCl, 5 mM β-mercaptoethanol, and 50% glycerol, and stored at -30°C.
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8

Protein Fractionation Using Ultrafiltration

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Z-100 was added to a centrifugal ultrafiltration unit (Amicon ultra 3 kDa, Merck Millipore, MA, U.S.A.) and centrifuged. The retentate was collected, and 20 mmol/L Tris-HCl (pH 8.0) was added. The resulting liquid was passed through a HiTrap QFF column (GE Healthcare, IL, U.S.A.), and the flowthrough was defined as the nonanion fraction. Next, an elution buffer (1 mol/L NaCl, 20 mmol/L Tris-HCl, pH 9.0) was added to the column, and the eluted liquid was defined as the anion fraction. Using Amicon ultra 3 kDa, the elution buffer in the nonanion and anion fractions was replaced with distilled water.
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9

Production of Recombinant AAV9 Vectors

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Recombinant serotype 9 adeno-associated viral (AAV) vectors were produced according to standard procedures, as described in (Löw et al., 2013 (link)). Briefly, HEK AAV-293 cells (Agilent) were co-transfected with the pAAV (px601 or px601-gPUM2sh#1) and pDP9 plasmids. The AAV9 particles contained in the cell lysates were isolated on an iodixanol gradient followed by ion exchange FPLC using a HiTrap Q-FF column (5 ml, GE Healthcare) connected to an AKTA start chromatography system (GE Healthcare). After buffer exchange (resuspension in DPBS) and concentration on a centrifugal filter (cut-off 100 kDa, Amicon Ultra, Millipore), the vector suspensions were titered by real-time PCR for the presence of genome-containing particles (VG), as described in (D’Costa et al., 2016 (link)). The titers of the obtained AAV9 suspensions used for in vivo experiments ranged between 7.9E13 VG/mL and 2.4E14 VG/mL.
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10

Purification of GST-tagged Pgp3L1 Protein

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Bacterial lysates containing the GST-Pgp3L1 fusion protein were disrupted by sonication in buffer A (200 mM NaCl, 50 mM Tris–HCl pH 7.4, 0.5 mM EDTA) containing 0.5 mM phenylmethylsulfonyl fluoride and 5 mM dithiothreitol (DTT). Crude extracts pre-cleared by centrifugation were incubated with glutathione Sepharose (GE Healthcare Life Sciences, UK) and the resin was extensively washed in buffer A. The GST tag was cleaved from the protein using thrombin (3 U per milligram of protein) for 4 h at 25°C and the protein was eluted with buffer A. Protein-containing fractions diluted with three volumes of 50 mM Tris–HCl pH 7.4 were injected into a 5 ml HiTrap Q FF column (GE Healthcare) on an ÄKTApurifier (GE Healthcare). The bound protein was eluted with a linear gradient of 0.15–0.3 M NaCl in 50 mM Tris–HCl pH 7.4, and 5 mM DTT was then added to each 1 ml fraction. The pooled protein-rich fractions were further concentrated twofold to fivefold by ultrafiltration in a Centriprep Ultracel YM-3 (3000 molecular-weight cutoff) column (Millipore, UK). Protein concentration was determined by the Bradford assay with bovine serum albumin as a standard (Bio-Rad, UK) and aliquots (2 µl) were denatured in 2× SDS buffer (Laemmli, 1970 ▸ ) for 5 min at 95°C and analysed by PAGE on a 10% gel.
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