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28 protocols using cathepsin k

1

Periplocin's Modulation of Osteoclastogenesis

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Periplocin was purchased from State General Administration of the People's Republic of China for Quality Supervision and Inspection and Quarantine. The recombinant human RANKL was purchased from Peprotech Biotechnology. M-CSF was purchased from eBioscience. STAT3, phospho-I-κBα, phospho-p65, c-Fos, cathepsin K, NFATc1, Goat Anti-Mouse IgG1-HRP and Goat Anti-Mouse IgG2a-HRP antibodies were purchased from Santa Cruz Biotechnology. I-κBα, TLR4 and MMP-9 antibodies were purchased from Abcam. Phospho-STAT3 Tyr705 antibodies was obtained from Signalway. Alfa-MEM medium, fetal bovine serum and trypsin were purchased from Gibco Inc. TNF-α, IFN-γ, IL-1β, IL-4 and IL-22 ELISA kit were purchased from ebioscience. DMSO and MTT were purchased from Sigma-Aldrich Shanghai, China.
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2

Western Blot Protein Analysis Techniques

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Western blot analysis was conducted using the procedure previously described [55 (link)]. We used antibodies against Lrp5 (5731s, RRID:AB_10705602), MMP2 (87809s, RRID:AB_2800107), Runx2 (8486s, RRID:AB_10949892), Snail (3879s, RRID:AB_2255011), TGFβ (3711s, RRID:AB_2063354), cleaved caspase 3 (9661s, RRID:AB_2341188) (Cell Signaling, Danvers, MA, USA), MMP3 (sc-21732, RRID:AB_627958), MMP9 (sc-393859), cathepsin K (sc-48353, RRID:AB_2087687), NFATc1 (sc-7294, RRID:AB_2152503) (Santa Cruz, Dallas, TX, USA), Nexin (ab222754), Chemerin (ab103153, RRID:AB_10861013) (Abcam, Cambridge, MA, USA), p53 (UJ290170, Invitrogen, Carlsbad, CA, USA), TRAIL (NB500220, NOVUS, Centennial, CO, USA, RRID:AB_10003305), and β-actin (A5441, Sigma-Aldrich, Saint Louis, MO, USA, RRID:AB_476744). RNA interference was conducted using siRNA specific to Chemerin (#82104), nexin (#150176), and Lrp5 (s69315) (Thermo-Fisher, Waltham, MA 02451, USA), with a negative siRNA (Silencer Select #1, Thermo-Fisher) using the procedure previously described [56 (link)]. The overexpression of Lrp5 and p53 was achieved by transfecting Lrp5 plasmids (#115907, Addgene, Cambridge, MA, USA, RRID:Addgene_115907), and p53 plasmids (#69003, Addgene, Cambridge, MA, USA, RRID:Addgene_69003), respectively.
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3

Osteoclast Differentiation Regulation

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MA (purity >98%) was obtained from the National Institutes for Food and Drug Control (Beijing, China) and dissolved in dimethyl sulfoxide (DMSO) at a stock concentration of 100 mmol L−1. Alpha modified minimal essential medium (α‐MEM), penicillin/streptomycin (P/S), and fetal bovine serum (FBS) were purchased from Thermo Fisher Scientific (Carlsbad, CA, USA). M‐CSF and GST‐rRANKL were produced in our laboratory according to previous reports.25, 26 Tetrazolium salt (MTS) solution, TRIzol, and rhodamine‐conjugated phalloidin were purchased from Thermo Fisher Scientific (San Jose, CA, USA). Oligo‐dT primer and SYBR Green were obtained from Imgenex (Littleton, CO, USA). Primary antibodies specific for NFATc1, integrin β3, Cathepsin K, V‐ATPase‐d2, IκB‐α, pERK1/2, ERK1/2, and β‐actin were obtained from Santa Cruz Biotechnology (San Jose, CA, USA). Antibodies specific for c‐Fos, pJNK1/2, JNK1/2, p‐p38, and p38 were purchased from Cell Signaling Technology (Beverly, MA, USA).
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4

Western Blot Analysis of Osteogenic Markers

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Cells were lysed in a radio-immunoprecipitation assay buffer with protease inhibitors (PIA32963, Thermo Fisher Scientific) and phosphatase inhibitors (2,006,643, Calbiochem, Billerica, MA, USA). After cell lysis, proteins were fractionated by 10%–15% SDS gels and electro-transferred to polyvinylidene difluoride transfer membranes (IPVH00010, Millipore, Billerica, MA, USA). After blocking 1 h with a blocking buffer (1,706,404, Bio-Rad, Hercules, CA, USA), the membrane was incubated overnight with primary antibodies and then with secondary antibodies conjugated with horseradish peroxidase for 45 min (7074 S/7076 S, Cell Signaling, Danvers, MA, USA). We used antibodies against Lrp5, Runx 2, Snail, MSN, Calr, cleaved-caspase 3, caspase 3, CD91, p-CREB, and CREB (Cell Signaling), c-fos, NFATc1, Cathepsin K (Santa Cruz Biotechnology, Dallas, TX, USA), CD47 (Thermo Fisher Scientific), Collagen I (Novus Biologicals, CO, USA), Osteocalcin (abcam, Boston, MA, USA), and β-actin as a control (A5441, Sigma). The protein level was determined using a SuperSignal west femto maximum sensitivity substrate (PI34096, Thermo Fisher Scientific), and a luminescent image analyzer (LAS-3000, Fuji Film, Tokyo, Japan) was used to quantify signal intensities.41 (link) The levels of Calr and MSN in CW008-treated CM were determined using the ELISA kits (MBS263181 and MBS2709503; MyBioSource).
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5

Osteoclast Differentiation Signaling Pathway

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BMDMs were incubated with 30% of L929-conditioned medium and 100 ng/mL of RANKL with or without ChondroT or its constituent herbs for indicated time. Cell lysates were quantified with Bradford’s reagent (Bio-Rad, USA). Equal concentrations of proteins were subjected to 10% SDS-PAGE, and were transferred onto PVDF membranes (Millipore Ltd., Carrigtwohill, Germany). After blocking, membranes were incubated with antibodies specific to osteoclast related proteins (c-Fos, NFATc1, MMP9, Cathepsin K, GAPDH, 1:1000, Santa Cruz, CA, USA), MAPKs signals [JNK (1:500, Santa Cruz, CA, USA) and (p-JNK, ERK, pERK, p38, p-p38, 1:500, Cell signaling Tech, MA, USA)], and NF-κB signals (NF-κB p65, LaminB, β-actin, 1:1000, Santa Cruz, CA, USA), and then incubated with HRP-conjugated secondary antibodies. Immunoreactive proteins were detected with an ECL Western blot detection system (Advansta, Menlo Park, CA, USA).
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6

Immunohistochemical Analysis of Periodontal Proteins

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Maxillae tissue was deparaffinized and rehydrated. Gingival and periodontal tissue slices (4 μm) were washed with 0.3% Triton X-100 in phosphate buffer, quenched with endogenous peroxidase (3% hydrogen peroxide), and incubated overnight at 4°C with primary antibodies against the following proteins (all antibodies 1:400): receptor activator of the NF-κB ligand (RANKL), superoxide dismutase-1 (SOD-1), receptor activator of NF-κB (RANK), glutathione peroxidase-1 (GPx-1), osteoprotegerin (OPG), matrix metalloproteinase 2 (MMP-2), cathepsin K, and cyclooxygenase-2 (Santa Cruz Biotechnology, INTERPRISE, São Paulo, SP, Brazil) and incubated for 30 min with a streptavidin/horseradish peroxidase-conjugated secondary antibody (Biocare Medical, Concord, CA, USA). Immunostaining was visualized using colorimetric detection (Biocare Medical, Dakota, USA). The staining status was identified as either negative or positive; positive staining was defined as the presence of brown chromogen. Staining intensity and the proportion of immunopositive cells were examined independently by two pathologists by light microscopy and recorded. Intensity of staining (IS) was graded on a 0 to 2 scale according to the following semi-quantitative assessment: 0 = no detectable staining, 1 = weak staining; 2 = strong staining.22
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7

Immunoblotting of Cell Signaling Proteins

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To visualize NFATc1 (Thermo Scientific), cathepsin K (Santa Cruz), and α-tubulin (Santa Cruz), whole-cell lysates were prepared by the RIPA buffer (Thermo Scientific). Proteins were resolved by SDS-PAGE, electroblotted to polyvinylidene difluoride membrane (Millipore), blocked in 1 X TBST (Cell Signaling), and probed with primary antibodies (1:1000). Following incubation with anti-mouse IgG HRP-linked antibody (1:2000) (Cell Signaling) or anti-rabbit IgG HRP-linked antibody (1:2000) (Cell Signaling) was detected using enhanced chemiluminescence (Thermo Scientific).
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8

RIPA Lysis Buffer Protein Extraction

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Radioimmunoprecipitation assay (RIPA) lysis buffer (Millipore Sigma, Burlington, MA) was prepared by mixing RIPA with protease inhibitor and phosphatase inhibitor (1:100). The medium was aspirated from the wells and the cells were washed 3x with 5 mL PBS. A volume of 300 μl RIPA buffer was added to each well. The cells were scraped off the wells and transferred to 1.5 mL tubes incubated on ice. The cells were sonicated on ice and centrifuged at 4°C for 10 minutes at 13,200 rpm. The supernatant was transferred to separate tubes and placed on ice for PAGE or stored in the -80o freezer. Antibodies used for this study included1o Ab specific to p-STAT3 (Ser727), NFATc1, c-Fos, and Cathepsin K; all were purchased from Santa Cruz Biotechnology (Dallas, Tx); 1o Ab specific to ß-actin Ab was obtained from Sigma-Aldrich, (St Louis, MO).
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9

Western Blot Analysis of Osteoclast Proteins

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Using a RIPA buffer with protease and phosphatase inhibitors (PIA32963, ThermoFisher Scientific, and 2006643, Calbiochem, Billerica, MA, respectively), cells were lysed. SDS gels (10%–15%) were used to size-fractionate proteins, followed by an electrotransfer to transfer membranes (IPVH00010, Millipore, Billerica, MA). The membrane was blocked for 1 h with a blocking buffer (1706404, Bio-Rad, Hercules, CA) and incubated with primary antibodies followed by horseradish peroxidase-conjugated secondary antibodies (7074/7076, Cell Signaling, Danvers, MA). Antibodies, used in this study were NFATc1, cathepsin K (Santa Cruz Biotechnology, Dallas, TX), Hsp90ab1 (Abcam, Cambridge, UK), Myh9 (3403S, Cell Signaling), and β-actin as a control (A5441, Sigma). A SuperSignal west femto maximum sensitivity substrate (PI34096, ThermoFisher Scientific) was used to visualize protein bands with a luminescent image analyzer (LAS-3000, Fuji Film, Tokyo, Japan).47 (link)
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10

Osteoclastogenesis Assay Protocol

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Fetal bovine serums (FBS), α-modified essential medium (α-MEM), and penicillin were purchased from Gibco (Gaithersburg, MD, USA). RANKL was purchased from PeproTech (Rocky Hill, NJ, USA), and M-CSF was purchased from R&D Systems (Minneapolis, MN, USA). All primary antibodies as phospho-p38, p38, phospho-ERK, ERK, phospho-JNK, JNK, phospho-Akt, Akt, and c-Fos were obtained from Cell signaling Technology (Danvers, MA, USA). NFATc1 and cathepsin K were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Trizol and Supercript II Reverse Transcriptase were purchased from Invitrogen (Carlsbad, CA, USA). Calcium phosphate (CaP) coated plates were purchased from Cosmo Bio (Tokyo, Japan). All other chemicals were purchased from Sigma (St. Louis, MO, USA) unless otherwise indicated [24 (link)]. RT-PCR primers are listed in Table 1.
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