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Myiq2 real time pcr machine

Manufactured by Bio-Rad
Sourced in Japan

The MyiQ2 real-time PCR machine is a laboratory instrument designed for the amplification and detection of nucleic acid sequences using the polymerase chain reaction (PCR) technique. It is capable of performing real-time quantitative PCR (qPCR) analysis. The device is equipped with optical detection capabilities and temperature control systems necessary for conducting PCR experiments.

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5 protocols using myiq2 real time pcr machine

1

Quantitative real-time PCR for gene expression

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Total RNA was extracted from stem cells or homogenized tissues using
illustraTM RNAspin mini kit (GE Healthcare, Amersham, UK) and the cDNA was
generated from 2 μg of total RNA using the SuperScriptTM First-Strand Synthesis
System (Invitrogen, Carlsbad, CA, USA). Synthesized cDNAs were subjected to quantitative
real-time PCR using the Takara SYBR premix Taq quantitative PCR system (Takara Bio Inc.,
Shiga, Japan) and the MyiQ2 real-time PCR machine (Bio-Rad, Hercules, CA, USA). Primer
information and reaction conditions used for our quantitative real-time PCR analysis are
listed in Supplementary Table 1. All quantitative real-time PCR procedures, including the
design of primers, the validation of PCR conditions, and the quantification methods were
performed according to the MIQE guidelines17 (link).
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2

Quantitative mRNA Expression Analysis

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Total RNA of cells was extracted by using illustraTM RNAspin mini kit (GE healthcare, UK). The preparation of the first-strand cDNA was conducted following the instruction of the SuperScriptTM First-Strand Synthesis System (Invitrogen, Calsbad, CA). The mRNA expression levels of Bcl-2, Bax1, NAD(P)H:quinone oxidoreductase-1 (NQO-1), malic enzyme-1 (ME-1), oncostatin M (OSM) and epidermal growth factor (EGF) (for sequence information, see Supplementary Table 1) were measured by Takara SYBR premix Taq quantitative PCR system (Takara Bio Inc, Shiga, Japan) and in MyiQ2 real-time PCR machine (Bio-Rad, Hercules, CA). Parallel amplification of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as the internal control. Relative quantification was done by using the 2−ΔΔCt method. The relative expression of the specific gene to the internal control was obtained and then expressed as percentage of the control value. All real-time PCR procedures including the design of primers, validation of PCR environment and quantification methods were performed according the MIQE guideline18 (link).
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3

Quantification of Gene Expression

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Total RNA was extracted using illustraTM RNAspin mini kit (GE Healthcare, UK) and then reverse-transcribed using SuperScriptTM First-Strand Synthesis System (Invitrogen, Calsbad, CA, USA). The mRNA expression levels were measured using Takara SYBR premix Taq quantitative PCR system (Takara Bio Inc, Shiga, Japan) and MyiQ2 real-time PCR machine (Bio-Rad). The sequences for the specific primers are listed in Supplementary Table 1. Parallel amplification of GAPDH was used as the internal control. Relative quantification was done by using the 2−△△Ct method. The relative expression of the specific gene to the internal control was obtained and then expressed as a percentage of the control value in the figures. All quantitative PCR procedures including the design of primers, validation of PCR environment and quantification methods were performed according the MIQE guideline11 (link)12 (link).
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4

Quantitative Real-Time PCR Analysis

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Total RNA of each rat was extracted from the liver sample or cell lysate by an using illustra™ RNAspin mini kit (GE healthcare, UK). The preparation of the first-strand cDNA was conducted following the instruction of the SuperScript™ First-Strand Synthesis System (Invitrogen, Calsbad, CA). The mRNA expression levels of target genes were measured by a Takara SYBR premix Taq quantitative PCR system (Takara Bio Inc, Shiga, Japan) using a MyiQ2 real-time PCR machine (Bio-Rad). The primer sequences and annealing temperatures used in these real-time PCR reactions are listed in Suppl. Table S1. Parallel amplification of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as the internal control. Relative quantification was done by using the 2−ΔΔCt method. The relative expression of the specific gene to the internal control was obtained and then expressed as a percentage of the control value in the Figures. All real-time PCR procedures including the design of primers, validation of PCR environment and quantification methods were performed according the MIQE guideline23 (link).
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5

Quantitative Real-Time PCR Analysis

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Total cellular RNA was extracted using illustra RNAspin mini kit (GE healthcare, UK). The preparation of the first-strand cDNA was conducted following the instruction of the SuperScript First-Strand Synthesis System (Invitrogen, Carlsbad, CA). The mRNA expression levels of target genes were measured by Takara SYBR premix Taq quantitative PCR system (Takara Bio Inc., Shiga, Japan) and in MyiQ2 real-time PCR machine (Bio-Rad, Hercules, CA). Parallel amplification of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control. Relative quantification was calculated using the 2−ΔΔCt method. Primers and PCR conditions were described in previous literature [15 (link)]. The relative expression of the specific gene to the internal control was obtained and then expressed as percentage of the control value. All real-time PCR procedures including the design of primers, validation of PCR environment, and quantification methods were performed following the MIQE guideline [16 (link)].
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