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22 protocols using superdex 200 pg

1

Production and Purification of IgG1 Antibodies

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The genes encoding the selected scFv clones were cloned into a modified mammalian expression vector containing the hIgG1 Fc regions (hFc) at the C-terminus as described previously [67 (link)]. The expression vectors were transfected into HEK293F cells (Invitrogen), and the fusion proteins were purified by Protein A affinity chromatography as described previously [67 (link)].
For the expression of IgG1, genes encoding VH and VL were amplified from the phage clones, cloned into a mammalian expression vector, and transfected into HEK293F cells. Then, IgG1 was purified by Protein A affinity chromatography as described previously [68 (link)]. Then the eluate containing IgG1 was subjected to gel filtration chromatography. A total of 4 mg of IgG1 was injected at a flow rate of 1 mL/min and purified by gel filtration using a XK16/100 column packed with Superdex 200 pg at pH 7.4 (ÄKTA pure, GE Healthcare). The chromatogram was recorded at a UV absorbance of 280 nm. The fractions containing IgG1 were pooled by collection criteria and concentrated.
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2

Protein Purification Using IMAC and SEC

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The cells expressing the protein of interest were harvested by centrifugation at 4000 rpm for 10 min at 4°C. The cell pellet was suspended in immobilized metal affinity chromatography (IMAC) binding buffer (5 mM imidazole, 0.5 M NaCl, 20 mM Tris) pH 7.5. The lysate was prepared using a microfluidizer at 15,000 psi for three cycles and clarified by centrifugation at 10,000 rpm for 30 min at 4°C. The clarified supernatant was applied to a Ni2+-charged IMAC column with chromatography carried out on an AKTA™ purification system (GE Healthcare, Chicago, IL). The loaded column was washed with additional IMAC binding buffer and then elution carried out using an elution buffer (0.5 M imidazole, 0.5 M NaCl, and 20mM Tris, pH 7.5). The His6 tag was removed using TEV protease after overnight dialysis in IMAC binding buffer. The protein was then applied to a second Ni-IMAC column and the flow-through collected, concentrated and buffer exchanged into 20 mM Tris, 200 mM NaCl, pH 7.5 prior to loading onto an equilibrated Superdex 200 pg (GE) for size exclusion chromatography (SEC). All fractions were analyzed by SDS-PAGE. SEC was also used to purify Spa33-MxiN complexes after mixing the proteins after each had been purified separately. TheMxiN, Spa33-MxiK and Spa33-MxiN samples were made to 10% (v/v) glycerol.
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3

SEC Characterization of Antibody-Drug Conjugates

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Example 71

This Example shows the characterization of ADC by SEC.

Analytical SEC experiments were run using a Waters 600 instrument, on a Superdex 200 (1.0×30 cm) column, at flow rate of 0.80 mU/min using PBS pH 7.4, and monitored at A=280 nm using a Waters 2998 PDA. An analytic sample was composed of 200 μL PBS (pH 7.4) with 30-100 μL of test sample. Preparative SEC purifications were performed using an AKTA instrument from GE Healthcare, on Superdex 200 PG (2.6×60 cm) column, at a flow rate 2 mL/min eluting with PBS pH 7.4, and monitored at A=280 nm. The SEC results in FIG. 16 indicate typical retention times for monomeric mAb and its conjugates and there was no detectable aggregation or degradation.

FIG. 16. SEC of anti-Her2 Ab, anti-Her2-PEG3-N3, and anti-Her2-Ex49.

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4

Characterization of Glycosidase Enzymes

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The 4-nitrophenyl-α-d-galactopyranoside (pNP-α-Gal), d-galactose (Gal), and 4-nitrophenyl-α-N-acetylgalactosaminide (pNP-α-NAcGal) were purchased from Sigma-Aldrich Chemical Company (St. Louis, MO, USA). Encyclo DNA-polymerase and enterokinase were purchased from Evrogen JSC (16/10 Miklukho-Maklaya str., Moscow, Russian Federation). Nco I and Sal I were purchased from New England Biolabs (NEB), Ipswich, MA, USA. pET 40 b(+) plasmid was purchased from Invitrogen, Carlsbad, CA, USA. Bacto-tryptone, sorbitol, MgCl2, KH2PO4, kanamycin, glycerin phenyl methanesulfonyl fluoride PMSF were purchased from (Helicon, Moscow, Russian Federation, Kutuzovsky Prospect, 88). Sodium phosphates one- and two-substituted were purchased from PanReac AppliChem GmbH (Ottoweg 4, Darmstadt, Germany). IMAC Ni2+ Sepharose, Q-Sepharose, Mono-Q, and Superdex-200 PG were purchased from GE Healthcare (Uppsala, Sweden). EtOH, trifluoroacetic acid (TFA), CD3OD were from the Russian Federation.
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5

Monoclonal Antibody Production from Hybridoma

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IF-specific epitope peptides and Tag peptides were synthesized and used to immunise mice. Spleen cells from immunised mice were fused with myeloma cells (P3X63Ag8.653) as previously described19 (link). Anti-IF mAb-producing hybridoma clone 99–5 and anti-Tag (Control) mAb-producing hybridoma clone 2545 were established as previously described3 (link). Both hybridomas were cultured with Hybridoma–SFM (Gibco)-containing supplement. Antibodies were obtained from culture supernatant by using Protein G sepharose (GE, USA) followed by size exclusion chromatography using Superdex 200 pg (GE, USA).
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6

Enzymatic Synthesis of Specialized Pro-Resolving Lipid Mediators

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The PUFA substrates LA, AA and EPA were purchased from TCI chemicals (Tokyo, Japan). DHA was obtained from Thraustochytrid microalgae (Schizochytrium sp. SH103)14 (link). The HFA standards 17S-HDHA and resolvin D1-5 were obtained from Cayman Chemical (Ann Arbor, MI, USA). The pfu DNA polymerase premix was purchased from Bioneer Inc. (Daejeon, Korea). Restriction enzymes were supplied by New England Biolabs (Beverly, MA, USA). The epoxide hydrolase (EH) was purchased from Sigma-Aldrich (St. Louis, MO, USA). The E. coli DH5α strain used for gene cloning was purchased from Real Biotech Corporation (Banqiao, Taiwan). The plasmid pET-28a and E. coli BL21 (DE3) were supplied by Novagen (Madison, WI, USA). HiTrap Talon crude (5 mL) and Superdex 200 pg (16/600) were purchased from GE Healthcare (Madison, WI, USA). The SUPELCOSIL LC-DIOL column (25 cm × 3 mm, 5 μm) was obtained from Sigma-Aldrich (St. Louis, MO, USA). The HECTOR-M C18 column (25 cm × 4.6 mm, 5 μm) was purchased from RS Tech (Cheongju, Korea). The CHIRALPAK IB column (25 cm × 4.6 mm, 5 μm) and CHIRALCEL OD-H column (25 cm × 4.6 mm, 5 μm) were obtained from Daicel (Tokyo, Japan). Diaion HP20 resin was obtained from Mitsubishi Chemical (Tokyo, Japan). All solvents for high-performance liquid chromatography (HPLC) analysis were from DaeJung Chemical (Siheung, Korea). All reagents used in this study were extra pure grade.
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7

Transient Expression and Purification

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The vectors were used for transient expression with the ExpiCHO Expression System (Thermo Fisher Scientific). Fetal bovine serum (20%) was added to the medium to suppress enzymatic activity. Transiently expressed culture supernatant was applied to a Superdex 75pg (GE) gel filtration column equilibrated with 50 mM Tris-HCl (pH 8.5)/300 mM NaCl. Next, the elution area of the target product was collected and applied to a Ni column using the same buffer conditions as for the Superdex 75pg. After washing with the same buffer, the target product was eluted with PBS containing 200 mM imidazole and 150 mM L-Arg. To obtain the final product, the eluted solution was purified on a Superdex 200pg (GE) gel filtration column equilibrated with PBS buffer containing 150 mM L-Arg.
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8

Purification and Characterization of rh Bri2 BRICHOS

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Different rh Bri2 BRICHOS species were separated and analyzed by Superdex 200 PG, 200 GL or 75 PG columns (GE Healthcare, UK) using an ÄKTA basic 10 FPLC system (GE Healthcare, UK). Molecular mass standards aprotinin (6.5 kDa), ribonuclease (13.7 kDa), carbonic anhydrase (29 kDa), ovalbumin (44 kDa), conalbumin (75 kDa), aldolase (158 kDa) and ferritin (440 kDa) (GE Healthcare, UK) were used for calibration. For preparation of rh Bri2 BRICHOS oligomers for EM density map determination, a Superose 6 GL column (GE Healthcare, UK) was used.
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9

Purification and Crystallization of MICAL1 and MyoV

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MyoVaGTD, MyoVbGTD, MICAL1 with different boundaries, Spir2GTBM, Rab11a1–177, and all the mutants were overexpressed by an induction of 0.2 mM isopropyl-β-d-thiogalactopyranoside (IPTG) at 16°C overnight in BL21(DE3) Escherichia coli cells. The thioredoxin (Trx)–His–fused proteins were purified by using Ni2+–nitrilotriacetic acid (NTA) resin (GE Healthcare), and the GST-fused proteins were purified by glutathione Sepharose 4 column (GE Healthcare), followed by size exclusion chromatography (Superdex 200 pg, GE Healthcare) with a buffer of 50 mM tris (pH7.5), 100 mM NaCl, 1 mM DTT, and 1 mM EDTA. For crystallization, Trx-His–fused MyoVaGTD and MICAL1GTBM were treated with 3C protease overnight at 16°C to remove the fused tags and then further purified by a second Ni2+-NTA affinity chromatography, followed by SEC.
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10

Purification of recombinant cysteine synthase E

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E. coli BL21 (DE3) cells were transformed with the pET44a vector harboring the rCSE gene and cultured at 37 °C in LB medium to a suitable cell density (OD600 0.4–0.5). Protein expression was induced by adding IPTG (final concentration 0.1 mM). The cells were cultured overnight at 37 °C, then harvested and sonicated in a cell lysis buffer (50 mM Tris–HCl pH 8.0, 500 mM NaCl 1 mM DTT). The expressed rCSE contains a 6 × His-tag and a PreScission protease recognition sequence at the N-terminal. After centrifugation, the proteins were applied to Ni–NTA resin (Qiagen) and eluted with elution buffer (50 mM Tris–HCl pH 8.0, 500 mM NaCl, 500 mM imidazole1, 1 mM DTT). The His-tag moiety was removed by digestion with PreScission protease at 4 °C overnight. The digest was loaded on a HiTrap SP column (GE Healthcare), and rCSE was eluted by applying a gradient of the binding buffer (50 mM Tris–Cl pH 7.0, 1 mM DTT) and the elution buffer (50 mM Tris–Cl pH 7.0, 1 M NaCl, 1 mM DTT). Finally, the proteins were purified by Superdex200pg (GE Healthcare) size exclusion chromatography with crystallization buffer (20 mM Tris–HCl, 200 mM NaCl 1 mM DTT, pH 7.0).
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