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7 protocols using alexa fluor 633 conjugated secondary antibodies

1

Immunofluorescence Analysis of Podocytes

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Podocytes were fixed with 4% paraformaldehyde at 4°C for 20 min, and then permeabilized with 0.2% Triton X-100 for 3 min. Following this, cells were washed with PBS and then blocked using 10% goat serum (Thermo Fisher Scientific, Inc.) for 30 min at room temperature. Cells were subsequently incubated with 4 µg/ml anti-synaptopodin antibodies (cat. no. ab220345; Abcam) overnight at 4°C. Following this, cells were washed using PBS and then incubated with Alexa-Fluor® 633-conjugated secondary antibodies (1:500; A-21070, Thermo Fisher Scientific, Inc.) at 37°C for 1 h. Cells were subsequently stained using 4′-6-diamidino-2-phenylindole (Thermo Fisher Scientific, Inc.) for 5 min at room temperature. A fluorescence microscope (magnification, ×200; Olympus Corporation, Tokyo, Japan) was used to visualize the results.
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2

Visualizing Cellular Protein Interactions

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For immunofluorescence, cells were fixed with 3.7% paraformaldehyde in PBS and permeabilized with 0.2% Triton X-100. After 2 additional washes, the cells were blocked with 1% BSA for 1 hour at room temperature and subsequently incubated with the indicated primary antibodies (anti-RAD21, anti-YAP, anti-TEAD4, and anti-CTCF) and Alexa Fluor 633–conjugated secondary antibodies (Thermo Fisher Scientific). DAPI was used for nuclear staining for 15 minutes, and the stained cells were examined using a Zeiss LSM510 confocal microscope.
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3

Immunofluorescence Imaging of Brain Tissues

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For immunofluorescence staining, brain tissues were fixed and coated with optimal cutting temperature compound, made into 5 μm slices, and then probed with primary antibodies against microtubule-associated protein 2 (MAP2) overnight at 4 °C. The next day, samples were incubated with Alexa Fluor 633-conjugated secondary antibodies (Thermo Fisher Scientific) for 1 h at room temperature. Nuclei were labeled with DAPI (Thermo Fisher Scientific). Five random images were captured using a microscope (Leica, Germany).
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4

Quantitative immunofluorescence analysis of EMT markers

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Cells were seeded in 12-well plates containing glass coverslips, then cultured and treated with EGF as described above for 72 h. After washing with PBS three times, cells were fixed with 4% paraformaldehyde at room temperature for 10 min, permeabilized in freshly prepared 0.15% triton X-100 in PBS for 10 min, blocked in 3% BSA/PBS at room temperature for 1 h, and incubated with anti-E-cadherin (BD Biosciences), anti-Vimentin (abcam), anti-Slug (Cell Signaling Technology), anti-Anxa2 (Santa Cruz Biotechnology), anti-STAT3 (Cell Signaling Technology), and anti-p-STAT3 (Y705, Cell Signaling Technology) antibodies in a humid chamber at 4°C overnight. After repeated washing with PBS, cells were stained with anti-rabbit Alexa Fluor 488 and anti-mouse Alexa Fluor 633 conjugated secondary antibodies (Invitrogen) at room temperature for 1 h, followed by staining nucleus by DAPI. Finally, the coverslips were mounted with Mowiol-based anti-fading medium and visualized under a laser scanning confocal microscope (Leica TCS SP5).
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5

Retinal Cell Immunolabeling Protocol

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Vibratome sections (60 μm thick) and retinal flat mounts were stained with rabbit anti-calretinin (1:1000, Millipore), goat anti-ChAT (1:500, Millipore), rabbit anti-recoverin (1:1000, Millipore), rabbit anti-PKARIIβ (1:500, BD Bioscience, San Jose, CA), rabbit anti-TH (1:1000, Millipore), rabbit anti-HCN4 (1:500, Neuromab, Davis, CA), rabbit anti-VIP (1:1000, Immunostar, Hudson, WI), mouse anti-melanopsin (1:1000, Advanced Targeting Systems, San Diego, CA), mouse anti-PKCα (1:500, Sigma, Saint Louis, MO), and mouse anti-Znp1/SytII (1:1000, ZIRC, Eugene, OR) for 1 (vibratome slices) or 5 days (flat mounts) at 4°C. The tissue was then washed in PBS (3 × 30 min), incubated with DyLight 405- (1:100, Jackson ImmunoResearch, West Grove, PA), Alexa Fluor 488-, Alexa Fluor 568-, and/or Alexa Fluor 633-conjugated secondary antibodies (1:1000, Invitrogen, Grand Island, NY) for 2 hr at RT (vibratome slices) or 2 days at 4°C (flat mounts), washed again in PBS (3 × 30 min), and mounted in Vectashield mounting medium (Vector Laboratories, Burlingame, CA) for confocal imaging.
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6

Tracking ANDV Internalization in HMVEC-L Cells

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HMVEC-L were incubated in ice-cold, low-serum (1% FBS) EGM-2MV medium for 30 min before inoculation with ANDV (MOI = 30) for 1 h at 4°C. The cells were washed with ice-cold PBS, and given ice-cold, low-serum EGM-2MV media containing 10 kDa dextran (250 μg/mL) or transferrin (100 μg/mL) conjugated to AlexaFluor 488 (Life Technologies); the cells were then incubated for 20 min on ice. Cells were transferred to 37°C for 15 or 30 min, and then washed 3 times with ice-cold 2 mM PBS glycine (pH 2) before fixing cells with 4% paraformaldehyde in PBS, permeabilizing in 0.1% Triton X-100 in PBS, and imaging for immunofluorescence. Briefly, cells were stained with polyclonal anti-ANDV primary antibodies and AlexaFluor 633-conjugated secondary antibodies (Life Technologies), and cell nuclei were counterstained with DAPI (1 μg/mL). The resulting coverslips were examined by confocal microscopy.
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7

Immunofluorescence Labeling in Murine mPFC

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Mice were anesthetized with overdose injection of ketamine 50mg/kg, xylazine 5mg/kg, and acepromazine 1mg/kg (i.p) and perfused transcardially with 0.9% saline and 4% PFA in PBS. Double-labeled immunofluorescence was performed on coronal sections of the pregenual mPFC (Table S1). Immunostaining was visualized with either Alexa 488-, Alexa Fluor 555- or Alexa Fluor 633-conjugated secondary antibodies (Life technologies, Toronto, ON, Canada). See Table S1 and Supplemental Materials and Methods for details.
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